Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1847 ATGGCGGTTTTACCAAGTAGCTCCTCAAGCTTGGAATTGACCATATCTGTACCTGGTTTTGCTTCTTCACCAACCCTTCTTCCCTCATCATCTGTGAAAGAATTGGACATAAATCAAGTACCTCTTGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGAACCTCCTCGAAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACGTTGAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTCAAGAGGTGGTTCGGTTCCCTCACAGAGCAGAACCGGAGGCTCCAGAGGGAAGTGGAGGAGCTGCGAGCCATTAAGGTGGGCCCACCCACCGTGATCTCCCCTCACTCCTGCGAACCGCTCCCGGCCTCCACACTTTCCATGTGTCCCCGCTGCGAGCGTGTCACCTCCACCGCCGACAAACCGCCCTCCGCCGCGGCCACTTTGTCCGCTAAAGTGCCGCCAACTCAATCCCGCCAACCCTCCGCGGCCTGTTGA 642 0.5343 MAVLPSSSSSLELTISVPGFASSPTLLPSSSVKELDINQVPLEEDWMASNMEDEEESSNGEPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAIKVGPPTVISPHSCEPLPASTLSMCPRCERVTSTADKPPSAAATLSAKVPPTQSRQPSAAC* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1847 213 CDD homeodomain 63 121 IPR001356 GO:0003677
Gso7g1847 213 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Gso7g1847 213 SUPERFAMILY Homeodomain-like 49 121 IPR009057 -
Gso7g1847 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 195 - -
Gso7g1847 213 Pfam Homeobox associated leucine zipper 120 152 IPR003106 GO:0006355|GO:0043565
Gso7g1847 213 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Gso7g1847 213 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gso7g1847 213 PANTHER - 1 195 - -
Gso7g1847 213 SMART HOX_1 62 124 IPR001356 GO:0003677
Gso7g1847 213 MobiDBLite consensus disorder prediction 43 67 - -
Gso7g1847 213 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Gso7g1847 213 MobiDBLite consensus disorder prediction 198 213 - -
Gso7g1847 213 Gene3D - 56 128 - -
Gso7g1847 213 MobiDBLite consensus disorder prediction 183 213 - -
Gso7g1847 213 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1847 Gso-Chr7 41243399 41248506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1847 32 194 Homeobox Transcription Factor Family AT1G70920 63.095 2.46e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso7g1847 Homeodomain 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1847 K09338 - gmx:100775341 421.394