Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1844 ATGGAAGAAAACGGAGGAAACATCCACGCTGATAGTACCTTTTGCGGTTCTCCTGCGGTAGTTCAAGTTATACAAAAGGTGATTGCAGAGTTGATAGGGACATATTTCTTAATATTTGCAGGGTGTTGTTCTGTGATTATTAATAACGCAGAAGAGACTAAAGGGAGAATTACCTTTCCTGGAATATGCCTAGTGTGGGGTTTCTCAGTGACTATCTTGGTTTATTCTCTTGCTCACGTTTCTGGTGCTCATTTCAATCCAGCGGTCACTCTTAGCTTTGCCATCTATCGCCATTTCCCTTTGAGACTGGTGCCTCTTTATTTTATTGCGCAAGTACTAGGATCTTTCCTTGCTAGTGGGACATTGTACCTTCTCTTTGAAGTAAACGAGAAAACTTACTTTGGAACAATACCATCAGGATCTTATATTCAATCTCTTGTTTTTGAGATACTTACGTCATTTCTCTTGATGTTTGTTGTGTGTGCAGTTTCCACGGACAATAGAGCGATTGGAAAATTGGGAGGGATTGCAGTTGGTATGACAATCATAGTAAACGTCTTCATTGCCGGACCAATCTCAGGAGCTTCCATGAACCCAGCTAGAAGCCTTGGACCAGCTTTGGTGATGTGGGTTTACAATGGAATTTGGATTTATGTAGTTGGACCATTTGTTGGTGCCATACTAGGTGCTACATGCTACAACTTGATTAGATATACTGACAAACCACTCAGAGAAATTGGTGCAAGCTCAAAAATATTTAAAACCAGTGCGTGTACAAGTGCTACATAA 789 0.4068 MEENGGNIHADSTFCGSPAVVQVIQKVIAELIGTYFLIFAGCCSVIINNAEETKGRITFPGICLVWGFSVTILVYSLAHVSGAHFNPAVTLSFAIYRHFPLRLVPLYFIAQVLGSFLASGTLYLLFEVNEKTYFGTIPSGSYIQSLVFEILTSFLLMFVVCAVSTDNRAIGKLGGIAVGMTIIVNVFIAGPISGASMNPARSLGPALVMWVYNGIWIYVVGPFVGAILGATCYNLIRYTDKPLREIGASSKIFKTSACTSAT* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1844 262 CDD MIP 25 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Gso7g1844 262 TIGRFAM MIP: MIP family channel proteins 29 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 PANTHER AQUAPORIN NIP4-1 9 256 - -
Gso7g1844 262 Pfam Major intrinsic protein 21 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso7g1844 262 Gene3D Glycerol uptake facilitator protein. 7 247 IPR023271 -
Gso7g1844 262 SUPERFAMILY Aquaporin-like 22 244 IPR023271 -
Gso7g1844 262 PANTHER AQUAPORIN NIP2-1 9 256 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1844 Gso-Chr7 41166017 41168928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1844 11 254 Major Intrinsic Protein MIP AT5G37810 59.836 8.98e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1844 K09874 - gmx:100819179 524.242