Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1831 ATGGCCGGCGACGACCTCGCCGGAGACCACACGCCGGAGCTTCTGTGCCTGGTCCACGAAATCGCCGGAATGTGCTCGGCGGGGTCCTCCTCCGGCGCCGACGCCATGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACCTCTTCGAGGAGATTAAGGAACTCAAAAACAACAACGATGTCGGTGGTTCCGCTTCTTCTTCTTCTTCTTACTCGTCCTCTTCTTCCTCGGCGTCTTCAAAGTGGTCTTCTGATCTGGTCCTCGCGCTTCACTCCGCTAGACGCTTGCTTTCCGTCGCTAGAAACTTCCGTTCCTATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACGATTTGGACATCTCAGAGGAAGTCAAGGAGCAGGTGGATTTGGTGAGAACACAATTGAGACGAGCCACGGATAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGGCTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAGTAGGTTGCACAAACAACACAGCTGCCCTGAAAATTTATCAGAACTAGACAGCATTCCTATCAACTATGAAGAGAAAAGGTGCAGCAAAAATCCCGCTGGAACTCGCTTGGAAAGAACAAGGAGCATCCCTACTGAAGTTGAAGTTTCCTTAAATGCAACTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAGATTCTACCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAGCATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACCAATGGAAAATTAAAGAAAAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATCGAAGCTCTGGTCCGGAAGCTCTCCTGCCGATCTGTTGAGGAGCGTAGAGCAGCTGTTACTGAACTTCGATCGCTATCCAAACGAAGTACTGATAATAGAATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACACAAGACAATGCAGTTACTTCAATTCTCAACCTTTCCATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGGGCTGGAACCATGGAAGCAAGAGAAAATGCCGCAGCGACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGCGCCTCAGGAGCTATACCGGCTTTGGTGGAATTGCTCCAAAATGGGAGTCCTAGAGGAAAGAAGGATGCAGCTACAGCATTGTTCAATCTTTGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCACTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTCGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAGTTGCCATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCAGATAATCTTGCTTGTATAAGTAGACTTGGTGTTGTCATACCTCTCTCTGAACTTGCTCGAAATGGCACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAACATATTCGTAAGTTGCAGCAACTTTGA 1965 0.4555 MAGDDLAGDHTPELLCLVHEIAGMCSAGSSSGADAMFRKDCTDLVRRISLLTHLFEEIKELKNNNDVGGSASSSSSYSSSSSSASSKWSSDLVLALHSARRLLSVARNFRSYCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSHELSQPLAEEISQVLGKSVSRLHKQHSCPENLSELDSIPINYEEKRCSKNPAGTRLERTRSIPTEVEVSLNATDPESQEISETKILPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVRKLSCRSVEERRAAVTELRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGVVIPLSELARNGTERAKRKATSLLEHIRKLQQL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1831 654 Gene3D - 353 569 IPR011989 -
Gso7g1831 654 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 17 651 - -
Gso7g1831 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Gso7g1831 654 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Gso7g1831 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 497 539 IPR000225 GO:0005515
Gso7g1831 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Gso7g1831 654 SUPERFAMILY RING/U-box 274 349 - -
Gso7g1831 654 CDD RING-Ubox_PUB 279 321 IPR045210 -
Gso7g1831 654 Pfam Armadillo/beta-catenin-like repeat 487 525 IPR000225 GO:0005515
Gso7g1831 654 Pfam Armadillo/beta-catenin-like repeat 405 443 IPR000225 GO:0005515
Gso7g1831 654 SMART arm_5 445 485 IPR000225 GO:0005515
Gso7g1831 654 SMART arm_5 568 608 IPR000225 GO:0005515
Gso7g1831 654 SMART arm_5 404 444 IPR000225 GO:0005515
Gso7g1831 654 SMART arm_5 486 526 IPR000225 GO:0005515
Gso7g1831 654 SMART arm_5 527 567 IPR000225 GO:0005515
Gso7g1831 654 Pfam U-box domain 275 346 IPR003613 GO:0004842|GO:0016567
Gso7g1831 654 Coils Coil 148 168 - -
Gso7g1831 654 PANTHER U BOX DOMAIN-CONTAINING 17 651 - -
Gso7g1831 654 MobiDBLite consensus disorder prediction 65 85 - -
Gso7g1831 654 Gene3D - 570 649 IPR011989 -
Gso7g1831 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 498 IPR000225 GO:0005515
Gso7g1831 654 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Gso7g1831 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Gso7g1831 654 SUPERFAMILY ARM repeat 374 648 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1831 Gso-Chr7 41019690 41022982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1831 35 653 U-box Gene Family AT1G23030 63.124 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1831 - - gmx:100815448 1223.38