Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1830 ATGAGGAAGCCTAGTTGTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTTATTGATTATATCAAGAAACATGGTGAAGTTTGTTGGCGTACACTACCTCAGGCTGCAGGTTTACATCGGTGTGGTAAGAGTTGTAGGCTGAGATGGATAAACTATCTACGCCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCGCTGCTAGGCAACCGGTGGTCACTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCATATAAGAAGAAAGCTTATTAGCAAAGGCATTGACCCAAATAATCATAGATTGAACCATACAACCCCTTCTTCCCTTCAGAATTCACTCATGTCTGATGATAGTTCAAAAGCCTTTAGTATGAAAGACACTAATAAGAACGAGACAAGTAAATTACCTCGTGTCTACAACCATGTTGAAGTTTCAGATGCTGCAAGTGGTGAGGCTGAGTCACCGTGTGCATTGCCCGATTTAAACCTTGATCTCTCTATTACCAATCCTTCAGCTTCACAAAGTATTTCTGGAAACAATGTAAAACCATTTCATGAATCTAACTCGTCGAGGAAAGTGCAATTTGATTCCCCTTCTACACTTCTTCTGTTTCAGTAA 696 0.4037 MRKPSCDIKDLNKGAWSKQEDQKLIDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLNHTTPSSLQNSLMSDDSSKAFSMKDTNKNETSKLPRVYNHVEVSDAASGEAESPCALPDLNLDLSITNPSASQSISGNNVKPFHESNSSRKVQFDSPSTLLLFQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1830 231 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso7g1830 231 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso7g1830 231 SMART sant 65 113 IPR001005 -
Gso7g1830 231 SMART sant 12 62 IPR001005 -
Gso7g1830 231 MobiDBLite consensus disorder prediction 123 161 - -
Gso7g1830 231 PANTHER MYB TRANSCRIPTION FACTOR 2 230 - -
Gso7g1830 231 CDD SANT 68 111 IPR001005 -
Gso7g1830 231 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso7g1830 231 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gso7g1830 231 Gene3D - 67 160 - -
Gso7g1830 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gso7g1830 231 MobiDBLite consensus disorder prediction 122 162 - -
Gso7g1830 231 MobiDBLite consensus disorder prediction 195 231 - -
Gso7g1830 231 CDD SANT 15 60 IPR001005 -
Gso7g1830 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso7g1830 231 Gene3D - 5 66 - -
Gso7g1830 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 230 - -
Gso7g1830 231 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1830 Gso-Chr7 40991841 40994151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1830 2 214 MYB Transcription Factor Family AT2G16720 53.917 3.07e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g1830 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1830 K09422 - gmx:100814923 473.396