Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1823 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATGCCAGGTCCCAACGGTGGTGGTGGTGCCGGTGGTGCTGGAAACCAGTTCGTAACGACGTCGCTTTACGTCGGAGATCTCGACCCGAACGTCACGGACGCGCAGCTCTATGACTTGTTCAACCAATTGGGGCAAGTCGTGTCCGTTAGGGTTTGCAGGGATTTGACCAGCCGGAGATCGCTCGGTTATGGTTATGTCAACTTTAGCAACCCGCAAGACGCTGCTAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAGGCCCATCCGTATTATGTATTCGCATCGTGATCCCAGTATCCGTAAAAGTGGACAAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAGGCATTGCATGATACCTTTTCTACATTTGGAAATATCCTTTCGTGCAAGGTAGCTACGGATTCATCTGGGCAATCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCTATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAACAAGTGTACGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTGCTGCTGACAAGGCAAAATTCAACAATGTTTTTGTGAAGAATCTATCAGAATCAACCACCGATGATGAGTTGAAGAACACTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGTTTTGGATTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAATTTTGATGACAAAGAATGGTATGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGCGCAAACTTGTATGTAAAAAATTTAGATGATAGCATTGGTGATGAAAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCAAATGGCTTAAGTCGTGGATCGGGTTTTGTTGCATTCTCGACTCCCGAGGAGGCATCTAGAGCACTCCTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTAGCCCAAAGGAAAGAAGATAGGAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCAATGTATCCCCCAGGTGGTCCAGGTATTGGTCAACAATTATTTTATAGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGCTATCAACAACAACTTATGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCGAATTTTTTCGTGCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCCGGTGGAAGGCGTCCAGGTGCAGTTCAGCAGTCCCAGCAGCCAGTTCCTATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGTTATCCTCCTGGTAGGGGTATTCCTGATGTTCCTATACCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCAATCTCCCAGCAAATACCTGTTGGGGCTCTGGCAACGGCTCTGGCTAATGCTTCTCCAGAGCAGCAAAGGACGATGCTGGGTGAGAATCTCTACCCCCTTGTGGAACAGTTAGAGCCTGATAATGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTTGAGTCGCCAGAAGCCCTGAAAGCAAAGGTGGCTGAGGCAATGGACGTCCTAAGGAATGTTGCTCAGCAGCAGGCTGGCGGTACTGCTGATCAGCTGGCTTCCTTATCTCTTAATGACAACCTTGTTTCTTAA 1956 0.4709 MAQVQVPPQNAMPGPNGGGGAGGAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQLFYSQGPPAIIPSQPGFGYQQQLMPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRPGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPIPGVAGGMFSVPYDVGGMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNLVS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1823 651 Coils Coil 285 309 - -
Gso7g1823 651 SMART rrm1_1 32 105 IPR000504 GO:0003723
Gso7g1823 651 SMART rrm1_1 120 192 IPR000504 GO:0003723
Gso7g1823 651 SMART rrm1_1 314 386 IPR000504 GO:0003723
Gso7g1823 651 SMART rrm1_1 211 283 IPR000504 GO:0003723
Gso7g1823 651 CDD RRM4_I_PABPs 312 390 - -
Gso7g1823 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Gso7g1823 651 CDD RRM2_I_PABPs 117 193 IPR045305 -
Gso7g1823 651 MobiDBLite consensus disorder prediction 475 497 - -
Gso7g1823 651 SMART poly_2 565 628 IPR002004 GO:0003723
Gso7g1823 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Gso7g1823 651 MobiDBLite consensus disorder prediction 1 23 - -
Gso7g1823 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Gso7g1823 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Gso7g1823 651 Gene3D - 195 295 IPR012677 -
Gso7g1823 651 Gene3D - 120 192 IPR012677 -
Gso7g1823 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Gso7g1823 651 SUPERFAMILY RNA-binding domain, RBD 210 394 IPR035979 GO:0003676
Gso7g1823 651 PANTHER RNA BINDING PROTEIN 20 635 - -
Gso7g1823 651 CDD RRM1_I_PABPs 32 111 - -
Gso7g1823 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Gso7g1823 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Gso7g1823 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Gso7g1823 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Gso7g1823 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Gso7g1823 651 Gene3D - 24 119 IPR012677 -
Gso7g1823 651 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Gso7g1823 651 PANTHER POLYADENYLATE-BINDING PROTEIN 20 635 - -
Gso7g1823 651 SUPERFAMILY PABC (PABP) domain 494 643 IPR036053 GO:0003723
Gso7g1823 651 Gene3D - 296 398 IPR012677 -
Gso7g1823 651 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Gso7g1823 651 Gene3D - 549 632 - -
Gso7g1823 651 SMART rrm2_1 314 386 IPR003954 GO:0003676
Gso7g1823 651 SMART rrm2_1 211 283 IPR003954 GO:0003676
Gso7g1823 651 SMART rrm2_1 32 105 IPR003954 GO:0003676
Gso7g1823 651 SMART rrm2_1 120 192 IPR003954 GO:0003676
Gso7g1823 651 CDD RRM3_I_PABPs 209 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1823 Gso-Chr7 40894604 40899772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1823 30 650 Eukaryotic Initiation Factors Gene Family AT1G49760 75.316 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1823 K13126 - gmx:100780329 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1823 7 40894604 40899772 Gso2g0868 2 9864425 9869602 GST