Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1818 ATGAAGAAGTGCGTGGCGTTTCTTGCCACAACCATTTGGAAAAGGTTCCACGTTTCTCCTCCTCAAACTCAATGCCGATTCTACTGTTCTCCCCCCTCTCATGCTTCCTCCAACAAGCTCTTTGTGGGAGGGTTGTCATGGTCAGTGGACCACAAGTCCCTCAAAGAGGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCTAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATGTGAATAGGCACTAA 414 0.4589 MKKCVAFLATTIWKRFHVSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNRH* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1818 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Gso7g1818 137 PANTHER TRANSFORMER-2-RELATED 22 134 - -
Gso7g1818 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Gso7g1818 137 SUPERFAMILY RNA-binding domain, RBD 22 120 IPR035979 GO:0003676
Gso7g1818 137 Gene3D - 19 120 IPR012677 -
Gso7g1818 137 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 22 134 - -
Gso7g1818 137 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1818 Gso-Chr7 40844964 40847562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1818 36 117 C2H2 Transcription Factor Family AT2G19380 36.905 7.33e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1818 - - gmx:100810104 285.034