Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1816 ATGATCTGGTGGGATAGCTTGATTCTGATGCAAGGACAAAGGAGGACTATTGGATCATTTCCAGCAATTGTAAGTATGATGCAAGGGCCCAGTTCTAGTGGCACTGATATGAGTCATCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTACAGGGGATCTTCTGGTGAGACTGCATGTTTACGTGGCACTGGTCATAATGTTCAGAGCTTCAATGGCTGGAGTACTGGTGAATCTAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGCTGTCTTCTTCGTATAATGCTGCTACTGAGGATGGTCTCAGGTCTGAGGAAAGACAATTCGAACCAAATAATGTAATTTTTCCTGTTAGTTCAAATACTAATCTACATGGCAATCAATCTAGAGTCCACCCTTCCTTTTTGCAAGGTTCCAGTTCTACTCGTATTAGCCAGAATATTAGTCTAGATATGGGGCATGTTACTAATGCTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTAGTAGTGTTAATGCCAACAATACTAGTGGAATAGATAGAGAAAAGACATTGTTTGGCAGTGCTTCTTGTAATCACATAGGAGCTTCATCTGAAAGCTCTGGATACATGGCTCAGGGTGATAGTGCTAATTCAAGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCTGGAGGAAGCTCAAGCACTCTTGTACAATCTGGTAATGGTTGCTGGCCTATTGACCCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCTACACCTATAGAAGATATTCCTGTTACTAGTCCTCCATTATTTCAGAATGCAAGAAATGAAGTGAGACAAGAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGAAGAATGGGCCATCTACAGCATCAGGAATCTGTACCTCTCAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAAATACCTGGCTCTCACTCAATCAATGATTCATTGGAATTGAGGTTAACAGCTGGAGTGTCATCTGCTAATTCTGGTGCTTCTCTGAACCAATCACCTGCCTTGCGCATCCATTCTTTTCCTTGGAACAGAACTGCCAATCGTAGAGGGGCCAGGTCTTCAACTTCTTATAACTCTGGAGAAAGAGCTGTCTGGGAAGATTTTAATTTGAGAATGTTTCCAAGAGATAGTACTGAACACCCCATGAATGTGCCTGCGTCTTCAGGACATGAACCTACTGGTTGGCATACACCATCTGGTAATGTGAATAATTCTGGAGGTGTACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTTCACTCTCCCCCTAACCCTAGCTGGATTTTTAATCATGAAGTCCCAGCAGAAAATATGCAGAGTGTGTCAGAGTTCAGTCCCTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGGCCATTCAGCCCCATCTTCTTCTGGTCCTCCTTCATTTACCCAGGGTTCTAGCAGCAACCAACCATATGCAAGAACAGCATTGTTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTCCCCATTCACTGCGAGCATTAACCTTTGACAATGAGGGGAGACGTCGACTAATATCTGAGATTCGCCAAGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGAAATGCGCCTTGATGTCGACAACATGTCTTATGAGGAGTTGTTGGCATTGGAGGAGCGTATAGGAGACGTGAGCACTGGATTGAGTGAGGACATCATTATTAAGTTGATGAAACAACGAATTTACGTGTCTGTCATGACAGACTCTTCTATTGATTTGGAACCTTGCTGTATCTGTCAGGATGAATTTGCTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTCCATAGTGGCTGCATCAAGCAGTGGCTAATGCAGAAGAACCTCTGCCCTATTTGCAAAACAACAGCCTTAGCTACTTGA 2175 0.4326 MIWWDSLILMQGQRRTIGSFPAIVSMMQGPSSSGTDMSHQSSLNHVQNAVDFRLSDYRGSSGETACLRGTGHNVQSFNGWSTGESSSRLNLINQVNDEGLKSEHGLSSSYNAATEDGLRSEERQFEPNNVIFPVSSNTNLHGNQSRVHPSFLQGSSSTRISQNISLDMGHVTNAADRGKGKEAGSSVNANNTSGIDREKTLFGSASCNHIGASSESSGYMAQGDSANSSSSLVNWGPSCKRKALEGSSRQLCSGGSSSTLVQSGNGCWPIDPVDLNASSSLSDSTPIEDIPVTSPPLFQNARNEVRQEASNAFPLISIAENVERPLRNFDRRMGHLQHQESVPLNLPSTGSARHHNHSSLHQIPGSHSINDSLELRLTAGVSSANSGASLNQSPALRIHSFPWNRTANRRGARSSTSYNSGERAVWEDFNLRMFPRDSTEHPMNVPASSGHEPTGWHTPSGNVNNSGGVPPPSWIGSSSNVHSPPNPSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNGHSAPSSSGPPSFTQGSSSNQPYARTALLMERRGGDVLSGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIIIKLMKQRIYVSVMTDSSIDLEPCCICQDEFADGENVGSLDCGHEFHSGCIKQWLMQKNLCPICKTTALAT* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1816 724 Pfam Ring finger domain 677 718 IPR001841 -
Gso7g1816 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 722 IPR013083 -
Gso7g1816 724 SMART ring_2 677 717 IPR001841 -
Gso7g1816 724 MobiDBLite consensus disorder prediction 439 481 - -
Gso7g1816 724 MobiDBLite consensus disorder prediction 346 367 - -
Gso7g1816 724 MobiDBLite consensus disorder prediction 520 543 - -
Gso7g1816 724 ProSiteProfiles Zinc finger RING-type profile. 677 718 IPR001841 -
Gso7g1816 724 MobiDBLite consensus disorder prediction 100 115 - -
Gso7g1816 724 SUPERFAMILY RING/U-box 658 721 - -
Gso7g1816 724 MobiDBLite consensus disorder prediction 174 195 - -
Gso7g1816 724 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 724 IPR045191 GO:0061630
Gso7g1816 724 MobiDBLite consensus disorder prediction 451 481 - -
Gso7g1816 724 MobiDBLite consensus disorder prediction 100 120 - -
Gso7g1816 724 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 11 724 - -
Gso7g1816 724 CDD RING-H2_TTC3 676 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1816 Gso-Chr7 40804572 40812447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1816 10 724 C3H Transcription Factor Family AT2G15530 38.286 1.01e-119 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1816 - K19041 gmx:100809024 1434.85