Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1815 ATGCCTGGGAGTTTAGAACCGTTAGATTTGGGTGTTCACATACCCTACCACTTCCGATGCCCTATCTCGCTCGAACTCATGCGAGACCCAGTAACTGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACACCACATGTCCGGTCACACGCGCCACTCTCACCGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTTGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGATTCTGCCCCTGCTCACCTTCGCCTTTCTTCTCTCCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCTCTCATTGCCTCTCACAACCTTCTCCAGATCCTTCTCCCAATCGTTTTCAACAACGGTTCTGACGAGTTGAGTCACGAGTCGCTCGCGCTGCTCGTTATGTTTCCGCTCGGCGAGTCGGAATGTGCTTCGCTCGCATCTGATTCGATGAAGATTGGCTATTTATCGCGGATGTTGGCGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGGTTGAGATCGTCGTCGTCGGGACGCACTCGCCGGAGTTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCTCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGCCGCCGGCGCGCCGGCGGTGCTCGTGGACCGGCTGGCGGACTTTGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGCGGCGTTTGCAGCGCACGCGCTGACGGTGCCGATGCTGGTAAAGATAATCCTGAAGATCTCCAACCGCGCGACGGAGTACGCCGCTGGTGCGCTGCTCTCGCTGTGCTCGGAGTCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCATGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCGTCGGAAACTCTGACGATTTTGCATGCAGTCAGGTCGTTGTGGTTCCCTTTTGA 1245 0.5968 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSDSAPAHLRLSSLRRLRQLARDSDKNRSLIASHNLLQILLPIVFNNGSDELSHESLALLVMFPLGESECASLASDSMKIGYLSRMLAHNSFDVRVNSAALVEIVVVGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAAHALTVPMLVKIILKISNRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLMQSDCTERAKRKAQMLLKLLRDSWPQDSVGNSDDFACSQVVVVPF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1815 414 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Gso7g1815 414 SUPERFAMILY RING/U-box 12 90 - -
Gso7g1815 414 CDD RING-Ubox_PUB 18 59 IPR045210 -
Gso7g1815 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Gso7g1815 414 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Gso7g1815 414 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Gso7g1815 414 Gene3D - 290 390 IPR011989 -
Gso7g1815 414 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 410 - -
Gso7g1815 414 Gene3D - 89 288 IPR011989 -
Gso7g1815 414 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Gso7g1815 414 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1815 Gso-Chr7 40789715 40791579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1815 1 414 U-box Gene Family AT1G49780 65.330 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1815 - - gmx:100778730 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1815 7 40789715 40791579 Gso2g0860 2 9762888 9766944 GST