Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1813 ATGTGTCGTTTAAGTCTGTGTTGGTATTCTATTTTTTGTAAACAAAACTTTGTTGGTTTTATTTTCGGCGGCTTCCATCTGTTTGTTGATGGTTACATTGCATTTGCATGGTTTTGGATTTATCACATTTTTCATTTAGAATTGGCAGTTCTATCCAATTTTATGGCAAGGATTCCTGACAAGATTAAGTCTATTGATGGGTCAAAAGAGACGCTTAAGCTTGCTGTGAGAATCACCGACCTTTGGTTCGTTGGGACTCCCAACAAGTTTGAGCAAGCGGAAATGGTTATTGTTGATTCTGAGGGTGATCAAATTCATGCTGTTTGTAAAGCGGACCACCTAAAGTCTTGGAAAGCTTATTTGAAGGAGAATTCCACTTATGTTATGCATAATTTCAAAGTGGTCAAGAATGATGGTCAATTTAGAGTGTGTGAACATGAGTACAAGTTAGCTTTTATTGGAGTGACTATTGTTAGAGAAGTTGATTTGCATGAACTACCTTTTAAGGAATTTAGATTTGTTGAATTTGGAAATGTCGTTGCTGGGAATTTTGTGGTTGGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAGGTGCTTTTTCAGCATGTTTCATCAAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAGTTTTATCTTGCACACTTTGGGAAAATTATTGTATGCAGTTCTTAGCCTATTTGAATGAACGTGGAAATGATGGGCCGATCGTTATTATTTTGACACATGCCAGAATAAAAGATGCGCAGGGAAGTTATCTAGCTTCAGTGAGCAATTCGTTCAAGGCCTCAAAATTATTAATTAATGAACCTATATTGGAAATCCAGGAATTTAGAGAGAGGCTTTTAGATTTAGGTGTTAAGGTCAGCCCAGTTTTGCCACCTGGCGATCAAGGAAGTTCACAACTTTCAAGGGGAAGCCAACTATCATCAAAGGATGCATTTCTTTCAAAAGTTGAAGCCAAAACTATTTACGAGATCAATGGCATTTCTGAGGATGTTGTTTGTGTTACAGTGGGCACTATTAGCAAAATAGTCATGAATAATCATTCATGGTGTTATCCAGCTTGCGTTCAATGTCATAGAAAAACTGACATCCAAACAGGACCATTCACATGCGGATGTGGCAAAAATAATGACCAGCCTGTTCTAAGGTATAGAGTTGAAGTAATGGTTAGCCAAAACAATGACAGTAGCAAGTTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTCAAACAGCTGATGAAGTGAATAGGGTCAAGATTGAAGATGGTGATGTTGATTTAAATGCTTCTCCTCAAGCACTTGATAGGCTGTTGGGTTATGTGCTTGCTTTTAAGGTTAGGATTCAATCAAAATTCAGGAATGTCGTTGTTCTTAGATGCTCAAATGAATTAGATTTGATCAATGTTGTGCTCGACATGCTGGCTGATACTGAGGCATGTTCGAAAATAGATGCTTCGAACGTTGATTGCAATAATGCTACGCATCCTGAATGTTGGACCATGATCCAGTTGCAGGATTCCCTTTAA 1572 0.381 MCRLSLCWYSIFCKQNFVGFIFGGFHLFVDGYIAFAWFWIYHIFHLELAVLSNFMARIPDKIKSIDGSKETLKLAVRITDLWFVGTPNKFEQAEMVIVDSEGDQIHAVCKADHLKSWKAYLKENSTYVMHNFKVVKNDGQFRVCEHEYKLAFIGVTIVREVDLHELPFKEFRFVEFGNVVAGNFVVGLLVDIIGVVDQVLFQHVSSKNTRVVFRMKDLSGEVLSCTLWENYCMQFLAYLNERGNDGPIVIILTHARIKDAQGSYLASVSNSFKASKLLINEPILEIQEFRERLLDLGVKVSPVLPPGDQGSSQLSRGSQLSSKDAFLSKVEAKTIYEINGISEDVVCVTVGTISKIVMNNHSWCYPACVQCHRKTDIQTGPFTCGCGKNNDQPVLRYRVEVMVSQNNDSSKFLLWDRECAELIGQTADEVNRVKIEDGDVDLNASPQALDRLLGYVLAFKVRIQSKFRNVVVLRCSNELDLINVVLDMLADTEACSKIDASNVDCNNATHPECWTMIQLQDSL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1813 523 Gene3D - 60 160 IPR012340 -
Gso7g1813 523 SUPERFAMILY Nucleic acid-binding proteins 61 160 IPR012340 -
Gso7g1813 523 SUPERFAMILY Nucleic acid-binding proteins 171 293 IPR012340 -
Gso7g1813 523 Gene3D - 313 485 IPR012340 -
Gso7g1813 523 PANTHER REPLICATION FACTOR A 1, RFA1 65 428 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso7g1813 523 SUPERFAMILY Nucleic acid-binding proteins 332 467 IPR012340 -
Gso7g1813 523 CDD RPA1_DBD_C 329 475 IPR013955 -
Gso7g1813 523 CDD RPA1_DBD_B_like 185 293 - -
Gso7g1813 523 Gene3D - 165 299 IPR012340 -
Gso7g1813 523 Pfam Replication factor-A C terminal domain 351 438 IPR013955 -
Gso7g1813 523 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 65 428 - -
Gso7g1813 523 Pfam Domain of unknown function DUF223 94 181 IPR003871 -
Gso7g1813 523 CDD RPA1_DBD_A_like 73 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1813 Gso-Chr7 40745555 40751204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1813 97 441 Core DNA Replication Machinery Family AT5G08020 24.090 3.11e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1813 - - gmx:102661204 1029.24