Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1811 ATGGCTACCCCAAGTAAATCGACACCAATAATAGCTTCAGACACTTTGGAACCAAAAGGGAAGACTATGACTATGACTGAATCAAACGCAAACATTCTTCAATGTCCTTTAAACCAGCAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTATGGGATATTGAAAATTGTCCTGTTCCATGTGATGTACGCCCTGAGGATGTAGCAGGTAATATAAGAATGGCTTTACAGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCATATGGGGATTTCAATGCTTTCCCTAGGCGGCTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCGCCATCCTCTATAATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCCAGTGTGGTTCGTGGGGAAGGCTTTGTGCCCCCTTCGAAGGCTTTAGTGCCACCCCGTGGAGGTCCAGTTGATCTTGCTGGATATTTGATGGGATGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTATAACTCGAGGGAATTCTCAATGGTGTCACAATCTCTGTCTGAATACAACTGTGGCACATCGAACACGACTTACTTGCCAACAACTATGAGATCACATAGCTTTCCATCTGTATTGAACGATGCTCCAGGAGGGTCTATGATGCCCTCAAGTGACCTTAATGAATGCCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTCGAACTTTCTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAACTTTATGGGAGACCTCTTTATGTATCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGACACCATGGCTGTGGAAGGGAAAGGGAATCGTAAATTTGTGTATCTCGGAAACTGGAGGACAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATATGAATATTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATCGAAGAACCTGATGAAAGCAGTTGCATAGGAAAGGGCAATCAGGGTAGAGCCGCCAAATGTGAAGTCGATGACCATTTTATCGAGCAATTCAAGTATGAGCTGCAAGAGATTCTGGTAAGCTATTCTTGTAGAATATTCCTAGGTTGTTTCGAGGCTATATACCAGCAGCGATACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGGTTTGTTTGAGAAAGTGAGTGATGTGGTAGTATTGCATGAGGAACCAGCAAGCAAGAAGAAGTTTCTGGCTGCTGTGGGTGGTTAG 1605 0.4442 MATPSKSTPIIASDTLEPKGKTMTMTESNANILQCPLNQQLHSSLDGPVAILWDIENCPVPCDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRGGPVDLAGYLMGCHINDNSDGQNEEEAIVYRGMSQSYYNSREFSMVSQSLSEYNCGTSNTTYLPTTMRSHSFPSVLNDAPGGSMMPSSDLNECQLWVQPGDLNGLKGQLVRLLELSGGCLPLARVPAEYQKLYGRPLYVSEYGAIKLVNLFKKMGDTMAVEGKGNRKFVYLGNWRTGPSAPPLSLAKKDKKGKGAQEENMNIVTGGCSSDEFSDEERVVIEEPDESSCIGKGNQGRAAKCEVDDHFIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEGLFEKVSDVVVLHEEPASKKKFLAAVGG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1811 534 CDD LOTUS 460 522 - -
Gso7g1811 534 ProSiteProfiles OST-type HTH domain profile. 314 386 IPR025605 -
Gso7g1811 534 PANTHER - 37 529 - -
Gso7g1811 534 ProSiteProfiles OST-type HTH domain profile. 459 533 IPR025605 -
Gso7g1811 534 Pfam NYN domain 48 188 IPR021139 GO:0004540
Gso7g1811 534 CDD LOTUS 315 384 - -
Gso7g1811 534 CDD PIN_limkain_b1_N_like 48 174 - -
Gso7g1811 534 Gene3D - 314 384 IPR041966 -
Gso7g1811 534 Gene3D - 456 528 IPR041966 -
Gso7g1811 534 PANTHER LIMKAIN B LKAP 37 529 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso7g1811 534 Gene3D - 44 194 - -
Gso7g1811 534 Pfam OST-HTH/LOTUS domain 461 523 IPR025605 -
Gso7g1811 534 Pfam OST-HTH/LOTUS domain 316 382 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1811 Gso-Chr7 40730607 40734076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1811 45 199 C2H2 Transcription Factor Family AT5G61190 41.290 1.39e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1811 - - gmx:100807418 1088.56