Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1783 ATGGCTCAACCCAGTTCCAACGGGGATCTGAATAATAACCAGCAGGGTCAGGTTCAGCAACAGCAGCAGCAGTGGGCGGCGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCGGCCACAGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCCTACGCTCACCCCCATTACCCGCCGCCGCCGCCGCCTCCTCAGTCGTCTCACCATCACCACCACAAACAGGCCGCAGCCGCGGCGGCGGCTGCGGCCTCCTCCGACGAGATCAGGACCGTCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGAAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTGGAGTTCTATTCACGAGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACGATGATGCCCAATACAGATCAGGCATTCCGTCTGAATTGGGCCACATTCAGTGCGGGGGAAAGGCGTTCTTCCGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTGGCCGATATTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACCGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTACCAACAACAATATTCTTCTCAAGCTGTGCTATTGGCCGGTGGACACGCAGCTAATGGTGCTGTGGCCCAAGGTTCCCATTCTGAAGGGGATTTAAACAACACCACTATATTTGTTGGAGGGCTTGATTCTGACACCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCAGACAGAAAGAATGCTGAGGAAGCAATTCACGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGACTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCTGATTCCAATGGAGGCTATTTTGGTGGTCAGAGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCAACTGCAATTCAAGGGGCTTCCTAA 1296 0.5031 MAQPSSNGDLNNNQQGQVQQQQQQWAAAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYAHPHYPPPPPPPQSSHHHHHKQAAAAAAAAASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVLLAGGHAANGAVAQGSHSEGDLNNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGYFGGQSYGGHGFAVRQNQDIAMQPATAIQGAS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1783 431 CDD RRM3_NGR1_NAM8_like 313 384 - -
Gso7g1783 431 SUPERFAMILY RNA-binding domain, RBD 192 287 IPR035979 GO:0003676
Gso7g1783 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Gso7g1783 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
Gso7g1783 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 170 IPR000504 GO:0003723
Gso7g1783 431 Gene3D - 100 180 IPR012677 -
Gso7g1783 431 Gene3D - 296 418 IPR012677 -
Gso7g1783 431 SUPERFAMILY RNA-binding domain, RBD 305 410 IPR035979 GO:0003676
Gso7g1783 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 386 IPR000504 GO:0003723
Gso7g1783 431 MobiDBLite consensus disorder prediction 67 93 - -
Gso7g1783 431 SUPERFAMILY RNA-binding domain, RBD 62 182 IPR035979 GO:0003676
Gso7g1783 431 MobiDBLite consensus disorder prediction 1 23 - -
Gso7g1783 431 SMART rrm1_1 315 382 IPR000504 GO:0003723
Gso7g1783 431 SMART rrm1_1 102 177 IPR000504 GO:0003723
Gso7g1783 431 SMART rrm1_1 196 270 IPR000504 GO:0003723
Gso7g1783 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Gso7g1783 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 430 - -
Gso7g1783 431 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 23 430 - -
Gso7g1783 431 Gene3D - 182 287 IPR012677 -
Gso7g1783 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 274 IPR000504 GO:0003723
Gso7g1783 431 CDD RRM1_SECp43_like 102 182 - -
Gso7g1783 431 CDD RRM2_SECp43_like 194 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1783 Gso-Chr7 40304839 40309484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1783 103 393 Eukaryotic Initiation Factors Gene Family AT4G34110 30.201 3.20e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1783 - - gmx:100814564 686.797