Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1744 ATGGTTTACTCCTTCTATGACAAAACCTCTTCTTCTGGCTCTGATATTTCGGGGTTGATCAATCCTACTTTGAACAACCTTGGAGCTTCCAATGGCGTTTCGCGGGGCGGCTTGTCATCACCACATTCTTTGGTTTTTGAGAGTGAGAAGGGAGAGCTAGTGAAGTGCCCTGCAACTGCAAAGGTAGGGAAGAGTGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAACCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAACGCTCATCTTGCAACACTACGTGGCCTTGTGCCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATTAGCCAAGTGAAGGAATTGAAGAAAAATGCAATGGAAGCAAGCAAAGGTTTTCTGATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGAGATGGATCCATGTCTTACTGTGCAACTATCTGCTGTGATTTCAGATCTGAAATACTATCTGACCTAAGACAGACCCTTGATTCCCTTCCACTGCATCTAGTCAAGGCAGAAATTTCAACTTTGGCAGGTAGAATGAAGAATGTGTTTGTCTTCACGTGTTGCAAAGGAAACATTAATAATATTGATATTGAAAAATGCCAAGCTCTTGCAAGTACTGTTCACCAGGCACTATGTTCTGTGCTGGATAAGGCTTCTGCCACACTGGATTTCTCACCAAGAACATCGCATGCAAGCAAGAGGAGAAGATTATGCTTTATTGAAACATCCACTTCCTCATGCAACCACGGATCTTGTTTGTGCTGA 822 0.4355 MVYSFYDKTSSSGSDISGLINPTLNNLGASNGVSRGGLSSPHSLVFESEKGELVKCPATAKVGKSEICEAKALAALKNHSEAERRRRERINAHLATLRGLVPSTEKMDKATLLAEVISQVKELKKNAMEASKGFLIPMDADEVKVEPYDDEGGDGSMSYCATICCDFRSEILSDLRQTLDSLPLHLVKAEISTLAGRMKNVFVFTCCKGNINNIDIEKCQALASTVHQALCSVLDKASATLDFSPRTSHASKRRRLCFIETSTSSCNHGSCLC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1744 273 Gene3D - 71 132 IPR036638 GO:0046983
Gso7g1744 273 SMART finulus 80 129 IPR011598 GO:0046983
Gso7g1744 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Gso7g1744 273 PANTHER TRANSCRIPTION FACTOR BHLH30 3 266 IPR045847 GO:0003700|GO:0006355
Gso7g1744 273 PANTHER DNA BINDING PROTEIN-LIKE 3 266 - -
Gso7g1744 273 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Gso7g1744 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 126 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1744 Gso-Chr7 39672048 39676058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1744 60 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.279 2.23e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1744 HLH 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1744 - - gmx:100804756 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1744 7 39672048 39676058 Gso2g1158 2 14500538 14504831 GST