Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1742 ATGGAATTCACCAAGAAGCGCAAAACCGAAGAGAACGGCGACACCACCGATTATCCGCCGCAGCAATCCACCGAAGAATCCCCAATCGCCGCCGCAGCCCCCGCCCCCCTCGCCGCCGAAGACATCCGCAAGATCCTACAACCGTTCTCCCAGGAGCAGCTCCTCGACCTCCTCCAATCGGCATCGCTCCGCCACCCCGACGTCCTCGATGCCGTGCGCGCCGTTGCGGACCTCGATTCCACCCTCCGGAAGCTCTTCGTGCGCGGTCTCGCCGGCGAGACCACGACGGAGACCCTCCGCGGCGTGTTCTCGGCGTTCGGCGAATTGGACGAGGCCATCGTGATCATTGACAAGGCCACGGGGAGGTCCAAGGGCTACGGCTTCGTCGTATTCAGCCACGTGGACGGCGCAATTCTCGCCCTCAAGGAGCCCAGCAAGAAGATCGACGGCCGCATGACCGTCACACAGCTCGCCGCCGCCGGAGGCCCCGGCGGCGGCGACGTGTCCCTCCGTAAGGTCTTCGTTGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTGGGGTTTGACAAATCGAGTGGCAAAAGCAGAGGTTTTGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGTTGGTTGAACCATTGAAAACAATTGAGGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAACAAAAAGACGAAACCTTTTGTTGCGGATCAGCATCAGCAGCAACATCATCAGCAACATCCGCAGCAACAGATGCAGCAGCAAGGTTCGATGATGGTGCCTCAGTATGGTGGATATGGTGGTAATGGTTATGGGATGCAGCAGCAACAGCAGCAGCATCAGGTGCCACCGTATAATAATCAAATTCCGGTTGCCGGTGCTGGCGGGTATGGCCATGGATATGGTAATTCACAGATGGGCGGGCCGGTTTCCGGTGATTATGGTGCGAGGGTGCCTCCCAGTACTGGTGGGGGGTACCCTGATGGCTCGCAGTATGGCTTCCCTCCTTCATCGGGCCATCCGCCGCAGCCGCAGATTCCGATGGCGAGACCTCCTGGTGGAATGTACCAAGGCATGCCACCCTATTATTGA 1155 0.5861 MEFTKKRKTEENGDTTDYPPQQSTEESPIAAAAPAPLAAEDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADLDSTLRKLFVRGLAGETTTETLRGVFSAFGELDEAIVIIDKATGRSKGYGFVVFSHVDGAILALKEPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNKKTKPFVADQHQQQHHQQHPQQQMQQQGSMMVPQYGGYGGNGYGMQQQQQQHQVPPYNNQIPVAGAGGYGHGYGNSQMGGPVSGDYGARVPPSTGGGYPDGSQYGFPPSSGHPPQPQIPMARPPGGMYQGMPPYY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1742 384 PANTHER GEO13361P1-RELATED 1 355 - -
Gso7g1742 384 CDD RRM_RBM24_RBM38_like 83 157 - -
Gso7g1742 384 SMART rrm1_1 172 244 IPR000504 GO:0003723
Gso7g1742 384 SMART rrm1_1 84 156 IPR000504 GO:0003723
Gso7g1742 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 259 IPR000504 GO:0003723
Gso7g1742 384 SUPERFAMILY RNA-binding domain, RBD 78 161 IPR035979 GO:0003676
Gso7g1742 384 MobiDBLite consensus disorder prediction 1 33 - -
Gso7g1742 384 Gene3D - 168 303 IPR012677 -
Gso7g1742 384 Gene3D - 3 167 IPR012677 -
Gso7g1742 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Gso7g1742 384 SUPERFAMILY RNA-binding domain, RBD 168 256 IPR035979 GO:0003676
Gso7g1742 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 230 IPR000504 GO:0003723
Gso7g1742 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Gso7g1742 384 MobiDBLite consensus disorder prediction 333 384 - -
Gso7g1742 384 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1742 Gso-Chr7 39658874 39668661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1742 167 246 C2H2 Transcription Factor Family AT2G19380 35.000 6.87e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1742 7 39658874 39668661 Gso2g1160 2 14509854 14515283 GST