Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1728 ATGAATTTTCCATCCACTATTCCTCTTGCATTTCCTACCTATTTGTTCATTTTCTTTGTTCTAGTTAATTGCTACCAAGGTGAGGCTACAAATGGAGACAACAAGGTTATATCTATAGGTGCAATAATTGATGTTAACTCTCGGGTTGGGAAAGAACAGCTTGTAGCCATGGACCTTGCAGCTCAAAGTTACAATAACACTTCCAAGAGCCACAAGATGGCTCTTCATTTTCAGGAACCCACCAAAGATCCCTTCAGACCCACTTCTCTTGCTAGAAAGATGATTAAAACGCAGAAGGCGCAAGTGATTATAGGAATGCACGCATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAAACTCAAGTTCCGGTCATATCCTTTGCAGCACCTACCATTACCCCACCATTGCTGCCAACTCGCCTGCCATTCTCGGTAAGAATGGCCAACGATGGTACTGCATATGCAAAATGTGTTGCAGATATGGTACGTGTTTATAGTTGGCAGAGAGTAGTAGTCATTAATGAAGAGGGAGATTATGAGATGCTAGCACTGCTATCTGAGACCCTCCAAGAGGTTGGTTCAATGATTGAGTACCGTTTAGCTCTTCCATCACCTTCTTATCGAACTAATCCTGGAGAGTTCATACGCGAAGAGTTGAATAAGTTGATTAAAAATACACAATCCCGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTGCACAATTGGGACTTGTGGATGGAGAATCGGCTTGGATAATCCCAGAGAGAATAACAAATTTGCTTGACTCTGTCAACAAGTCTTCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAAGATAGCAGTGAGTATCAAGATTTTGAGGCTCAGTTCCGGAAATCTTTTCGGGCCAAGTATCCTGAGGAGGATAACCGCGATCCGGGATTTTACGCTCTGCAAGCATATGATAGCATTAAAATTGTTGCACAAGCAATAGACAGAATGGCCAGTGGCAGAAAGACTTTGTTAACCGAAATACTGTCTAGCAATTTCCTTGGCTTGAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCCAAATCCTACCTTCAGGATTGTAAATGTAGATAAGAAGAGTTACAGAGAATTAGACTTCTGGACTCTAAAACGTGGGTTCATCACTAACCTCACTACAGAACAAGGTTCAAATAGTGTTTCTAGGAACACAGAAAGTTTAAGTGCCGTAGTAATATGGCCAGGGAAACTAAATAGAGTTCCAAAAGGATGGAATCTGCCTACTAAACAAAAGCCAATGCAAATAGCAGTTCCTGGAAGAACCTCCTTTTCCAGGTTTGTCAAGGTTGATCGTGATGAGCTTACTAATTCATATAAATATAGTGGATTCTGCATTGAAATTTTTGAGAAGGTGTTAGACATTTTGGGGTATGATCTGCCGTATGAGTTTCATCCCATCAATGGAACCTATAGCGATCTGGTTCAACTTGTCTATAACAAGACTTATGAAGCAGTTATTGGAGACACGACCATAACAGAAGCCAGATTGCAATATGTAGACTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTACAGAAAAGTCCAACGAATCCACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACTGGGGCCGTGTTGACTTACACAATGGTAGTTGTGTGGTACCTGGAGCGGGAACCAAATCCTGAGTTTCAAGGCAATTGGAAAAGCCAAGTCAGCACTGCTCTTATGTTTACCTTCTCCTCTCTATTCTTTGCTCACAGGGAGAAAATCCATAACGACTTATCTCGCGTGGTGATGGTATCATGGCTGTTTCTAGTGTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAATTCAACGACTGCAACCAAATGTGACAGACATCCTGTGCCTGAAGAAGTACAACATGAAAATTGGTTGTGACGGAGATTCGTTTGTTAGAACATACCTGGAGAAAGTCGAACAATTCAAGCCAGAGAACATCATAAACATGGATAATGAATACAGCTATGAAGATGCATTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAGAAAGTATATATGAGTAAATACTGCAAGGGATACTCTGCCTCTGTACCTACCACCAAATTCGGAGGACTGGGATTTATGTTCCAGAAAGGCTCGCCAGTGGCCAGAGATGTTTCCAAAGCTATACTGAGGCTCTTGGAGCAGGGAGAACTGAGGATGTTAGAAGACAAATGGATGAACGATGCAGGAGACTGCTCCAACAATTCGACCTCAGAGAGTACAGAAAGTTTGAGGCTTGGAAGTTTCTGGGTTCTGTACGTGATCTCTGGTGCCACTTCTACAATTTGTTTTCTACTTTATACAATCCAGTTGCTGAAAACTAGACAACCAACCCATGATGATGCACAAGAACGTAATGGCAATCCAGGTGATGAAAACCGATGGAAAAGGATAGTTATAATTGCTAAGCAGATTTATAGCAGAAAGCATGCGACAGTGACACCCGTTCCTCACCAGCCCCAGGCTCCACAATTACCAGATATCATAACAGTGTCTTCGCCACCAACTGTTGCTATTCAAAACTCTTGA 2700 0.4204 MNFPSTIPLAFPTYLFIFFVLVNCYQGEATNGDNKVISIGAIIDVNSRVGKEQLVAMDLAAQSYNNTSKSHKMALHFQEPTKDPFRPTSLARKMIKTQKAQVIIGMHAWTEAASVAELGRKTQVPVISFAAPTITPPLLPTRLPFSVRMANDGTAYAKCVADMVRVYSWQRVVVINEEGDYEMLALLSETLQEVGSMIEYRLALPSPSYRTNPGEFIREELNKLIKNTQSRVFIVLQSSLEMVIHLFREAAQLGLVDGESAWIIPERITNLLDSVNKSSISYMEGALGIKTYYSEDSSEYQDFEAQFRKSFRAKYPEEDNRDPGFYALQAYDSIKIVAQAIDRMASGRKTLLTEILSSNFLGLSGEIRFEEAQLLPNPTFRIVNVDKKSYRELDFWTLKRGFITNLTTEQGSNSVSRNTESLSAVVIWPGKLNRVPKGWNLPTKQKPMQIAVPGRTSFSRFVKVDRDELTNSYKYSGFCIEIFEKVLDILGYDLPYEFHPINGTYSDLVQLVYNKTYEAVIGDTTITEARLQYVDFTVPYAESGLSMIVTEKSNESTWMFMKPFTWQMWVATGAVLTYTMVVVWYLEREPNPEFQGNWKSQVSTALMFTFSSLFFAHREKIHNDLSRVVMVSWLFLVLILNSSYTASLSSMLTIQRLQPNVTDILCLKKYNMKIGCDGDSFVRTYLEKVEQFKPENIINMDNEYSYEDAFKNNSIAAAFLELPYEKVYMSKYCKGYSASVPTTKFGGLGFMFQKGSPVARDVSKAILRLLEQGELRMLEDKWMNDAGDCSNNSTSESTESLRLGSFWVLYVISGATSTICFLLYTIQLLKTRQPTHDDAQERNGNPGDENRWKRIVIIAKQIYSRKHATVTPVPHQPQAPQLPDIITVSSPPTVAIQNS* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1728 899 CDD PBP1_GABAb_receptor_plant 38 402 IPR044440 -
Gso7g1728 899 Pfam Ligand-gated ion channel 785 814 IPR001320 GO:0015276|GO:0016020
Gso7g1728 899 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 868 - -
Gso7g1728 899 SUPERFAMILY Periplasmic binding protein-like I 34 439 IPR028082 -
Gso7g1728 899 CDD GluR_Plant 446 782 - -
Gso7g1728 899 Gene3D - 336 451 - -
Gso7g1728 899 PANTHER GLUTAMATE RECEPTOR 3.4 18 868 - -
Gso7g1728 899 Pfam Receptor family ligand binding region 55 387 IPR001828 -
Gso7g1728 899 Gene3D - 154 322 - -
Gso7g1728 899 Gene3D - 730 791 - -
Gso7g1728 899 SMART GluR_14 449 785 IPR001320 GO:0015276|GO:0016020
Gso7g1728 899 PIRSF IGluLR_plant 8 881 IPR017103 -
Gso7g1728 899 Gene3D - 456 556 - -
Gso7g1728 899 Pfam Bacterial extracellular solute-binding proteins, family 3 472 784 IPR001638 -
Gso7g1728 899 SUPERFAMILY Periplasmic binding protein-like II 423 784 - -
Gso7g1728 899 Gene3D - 557 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1728 Gso-Chr7 39483134 39487190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1728 13 841 Ion Channels AT2G29120 32.454 1.39e-138 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1728 - - gmx:100780320 1775.76