Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1717 ATGGCTGGTCTCATCGATCTCAACAACGCAACCGAAGACGATGAAATGCCGTCGTCTGGCTCCTCCTCCACCGTGTGCCTCGAGCTCTGGCACGCCTGCGCGGGTCCATTGATTTCCTTGCCCAAGAAAGGGAGTGTTGTCGTGTACTTCCCTCAGGGACACTTGGAGCAACACCTTCACGATTTTCCGCTCCCTGCCTCTGCCAACATCCCCTCCCATGTCTTCTGTCGCGTCCTCGATGTCAAGCTTCATGCTGAGGAAGGGAGTGATGAAGTTCATTGCCAGGTGGTGCTGGTTCCCGAAACTGAGCAAGTACATCAGAAGCTGCGGGAGGGGGAATTTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCCACGACGCCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACCAGCACTCATGGTGGATTCTCCGTGCCTCGTCGCGCTGCGGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCGAAGGATCTCCATGGCCAGGAATGGAGGTTTCGACATATTTATAGGGGGCAGCCACGAAGACACTTGCTTACTACCGGTTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAATTGAGATTGGGAATTCGTAGGGCGGCTCAATTGAAAAGTGGCAGTACCTTTTCAGCTCTTTCTGGCCAGCAATTGAGTCCTACCAGTCTTATGGATGTGGTTAATGCTTTGTCTGCAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGTACATCTGAGTTCATCATACCTATCCACAGATTCTTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGGATGCGCTTCGAAACCGAAGATGCTGCAGAGCGAAGATTTACAGGATTAATTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCTGGATCTAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGTCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCTACTGCAAATAACTTGATGTCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGAATTTCCAGTTTCCAATGTGATTGGAACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATCCTACTTATGATAGTATTAATGCTCAGAGTCACCAGGTATCTGATTTGAGGAGGTGCTATCCTGTCTCAAACTATCCTAGGATTGCTGCAACAGGAAATAACATTGGAATCCCACAAGTGAGTTCCAATGTTTCCAGCAATGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTTGATGAGGCTTGTGGAAATAGTCGCTGTGGACTCTTTGATGGTTACCAGGTGATGAGATCCAGAAATGGATGGTGTTCCGACATGAGTAACAATTCCTCAAATTTGCATCCTCCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATCTAGTTTCAAACTCCGATTATAACAACAAAATTAGTCAGGTGATGGGAGGTAAGTTCCATCAACGAGTTCCATATGCTTCTGATGTTAAAGGTGGAAAATTTGTATCAACCCCCTATGAGCCTCTTCTCTGTGGACTAGCTAAGGAAGGCACAAATTCTTTTGGTCTTTCAAACTTTCATAATCAGCTGGATAGTTCACGTTCACACGATTCCATATCAGTACTGAGAGCTAATCAAGAGTTGGTTCCCTCGTGTAAAAGTAGTTGCAGAGTCTTTGGTTTTTCATTAACTGAGGTTGCTCCCATTGCAAATAAAGAGGCTGCTGACTCATCTTCTGTAGCATGTTCTGGACCTTCCTTTACAAGACACGTTGATGATGATTTCCATCCAGGGCATTCACTTAGGAGCAAGGCAGTGGCAAGTTATTGCACCAAGGGTGTGCTGCAATATTGA 2130 0.462 MAGLIDLNNATEDDEMPSSGSSSTVCLELWHACAGPLISLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSHVFCRVLDVKLHAEEGSDEVHCQVVLVPETEQVHQKLREGEFDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQLSPTSLMDVVNALSARCAFSIHYNPRVSTSEFIIPIHRFLKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSKWRCLMVRWDDLEVTRHNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAKLEFPVSNVIGTSDFGESLRFQKVLQGQEMLGVNPTYDSINAQSHQVSDLRRCYPVSNYPRIAATGNNIGIPQVSSNVSSNGIGFSESFRFQKVLQGQEIFPSQPYGRALSVDEACGNSRCGLFDGYQVMRSRNGWCSDMSNNSSNLHPPVPSGQVSSPSSVLMFQQAVNLVSNSDYNNKISQVMGGKFHQRVPYASDVKGGKFVSTPYEPLLCGLAKEGTNSFGLSNFHNQLDSSRSHDSISVLRANQELVPSCKSSCRVFGFSLTEVAPIANKEAADSSSVACSGPSFTRHVDDDFHPGHSLRSKAVASYCTKGVLQY* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1717 709 SMART B3_2 135 237 IPR003340 GO:0003677
Gso7g1717 709 Gene3D - 133 237 IPR015300 -
Gso7g1717 709 CDD B3_DNA 133 235 IPR003340 GO:0003677
Gso7g1717 709 PANTHER AUXIN RESPONSE FACTOR 17 709 - -
Gso7g1717 709 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Gso7g1717 709 Pfam Auxin response factor 262 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso7g1717 709 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Gso7g1717 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 709 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso7g1717 709 SUPERFAMILY DNA-binding pseudobarrel domain 128 244 IPR015300 -
Gso7g1717 709 Gene3D - 298 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1717 Gso-Chr7 39300499 39306291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1717 20 489 B3 DNA Binding Superfamily AT5G60450 50.728 6.13e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso7g1717 B3 8.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1717 K14486 - gmx:100796970 1407.51