Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1696 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACAATTACTCTGGAGGTAGAGAGCTCAGACACAATTGACAATGTAAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGTCTAATACAATATTCAGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGAGGAGGAATGCAGATCTTTGTGAAGACTTTGATAGGTAAATCTGTCACCTTGGAGGTTGAAAGTTCAGACACAATTGATAATGTCAAAGCAAAATTCCAGGACAAGGAGGGAATCCTACCAGACCAGCGGAGGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACACTTGCTGA 387 0.4419 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGLIQYSESTLHLVLRLRGGMQIFVKTLIGKSVTLEVESSDTIDNVKAKFQDKEGILPDQRRVDLCWEAIGGWKDTC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1696 128 SMART ubq_7 1 67 IPR000626 GO:0005515
Gso7g1696 128 SMART ubq_7 72 127 IPR000626 GO:0005515
Gso7g1696 128 Gene3D - 1 71 - -
Gso7g1696 128 Gene3D - 72 115 - -
Gso7g1696 128 SUPERFAMILY Ubiquitin-like 57 113 IPR029071 -
Gso7g1696 128 PANTHER - 1 114 - -
Gso7g1696 128 SUPERFAMILY Ubiquitin-like 1 71 IPR029071 -
Gso7g1696 128 Pfam Ubiquitin family 3 69 IPR000626 GO:0005515
Gso7g1696 128 Pfam Ubiquitin family 74 113 IPR000626 GO:0005515
Gso7g1696 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gso7g1696 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gso7g1696 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gso7g1696 128 ProSiteProfiles Ubiquitin domain profile. 1 52 IPR000626 GO:0005515
Gso7g1696 128 ProSiteProfiles Ubiquitin domain profile. 72 114 IPR000626 GO:0005515
Gso7g1696 128 PANTHER UBIQUITIN 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1696 Gso-Chr7 39050992 39051958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1696 1 72 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 88.312 2.74e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1696 - K08770 crb:17880053 197.208