Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1687 ATGGACACAAGCAGGTATGAGGGAAAAAGGGTCTTGAGGTACAAAGAGGAAGATGAAAATGATGATGATGAAGAAGAAGAAGAGGTGAGTGAGGTGGGTTTTGGAGAAGACAGAAGAAGGAATAAGAGAGTAATGAGAGATCTCCATGGAAAGAGATCAGGGTCCAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAAGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGACGTCGCAAAAATGCAGTTGACTACCATGGAGAATGA 441 0.449 MDTSRYEGKRVLRYKEEDENDDDEEEEEVSEVGFGEDRRRNKRVMRDLHGKRSGSKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHELSEFDDSKRSCRTRLAGHNERRRKNAVDYHGE* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1687 146 MobiDBLite consensus disorder prediction 32 53 - -
Gso7g1687 146 PIRSF SBP 4 146 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gso7g1687 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 139 - -
Gso7g1687 146 MobiDBLite consensus disorder prediction 1 64 - -
Gso7g1687 146 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Gso7g1687 146 Pfam SBP domain 65 138 IPR004333 GO:0003677
Gso7g1687 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 139 IPR044817 GO:0003677
Gso7g1687 146 MobiDBLite consensus disorder prediction 1 17 - -
Gso7g1687 146 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Gso7g1687 146 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1687 Gso-Chr7 38938001 38940118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1687 50 142 SBP-box Gene Family AT2G33810 66.667 1.74e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso7g1687 SBP 3.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1687 - - gmx:100527199 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1687 7 38938001 38940118 Gso15g0655 15 5860963 5863048 PCT
Gso7g1687 7 38938001 38940118 Gso11g2949 11 45272125 45274366 PCT