Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1682 ATGGCCGCACCTTCCCTCTCCTCCGCTCTCAACTCCCTCTCCTCTCTATCCCTCTCCACCTCCTCCCGCTTCTCTCTCCTCCCTCCACCCTCCCTCCTCTCCAAACCTCTCCCCCTCCTCTTCGCAACCACCACCCTCAAATCCAAACCCTCCGACGACATTGACACATCGTTCTTCGACAACATCAACCCGCAAGACGACATCACATTCAACCCTCCGGAGCCCCCGGAGGGCTTCGTGGCGCCTCCGTCCTTCGACGACGGCCCCCTGGAGACTGAGGACGAAATCGCCGCAGCCTACGAGGAGCTCTACGGCCCCGGCTACAGCGGCGTCTCGGTCCTCGGCAACGACGTGTACGTGATGGACGCGAAGGTGAAGAAGGAGACCGGGTTCGGGTCCGGCGCTAAGAAGGAGAAGGTGAGGGATGGGTTCGAGGAGAGGGTGGTGCAGGTCAGGAGGGTCACCAAGGTCGTCAAGGGAGGGAAGCAGCTCAGGTTTCGGGCCGTCGTTGTCGTCGGCGACAAGAAGGGCTCAGTGGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCATTGCCGCGGTTCAGAAGTCCGCCGTCAATGCCAGGAGGAACATCATCAAGGTTCCTATGACTAAGTACTCCACTTTTCCCCATAGAGCTGACGGAGATTATGGAGCGGCAAAGGTGATGCTTAGACCTGCATCTCCGGGTACTGGAGTTATTGCTGGTGGGTCAGTGAGAATTGTTCTTGAAATGGCTGGAGTTGAGAATGCTTTGGGAAAACAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCAACCGTTGTTGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTTGCTGAGGAGCGTGGGATTCCAATGGAAGAATTGTGGAAGTAA 903 0.5681 MAAPSLSSALNSLSSLSLSTSSRFSLLPPPSLLSKPLPLLFATTTLKSKPSDDIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPGYSGVSVLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGSVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAEERGIPMEELWK* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1682 300 Gene3D - 130 205 - -
Gso7g1682 300 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 47 300 - -
Gso7g1682 300 ProSiteProfiles S5 double stranded RNA-binding domain profile. 144 207 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso7g1682 300 PANTHER RIBOSOMAL S SUBUNIT 47 300 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso7g1682 300 Hamap 30S ribosomal protein S5 [rpsE]. 121 297 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gso7g1682 300 Pfam Ribosomal protein S5, N-terminal domain 144 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso7g1682 300 TIGRFAM rpsE_bact: ribosomal protein uS5 143 297 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gso7g1682 300 Pfam Ribosomal protein S5, C-terminal domain 221 291 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gso7g1682 300 SUPERFAMILY dsRNA-binding domain-like 140 209 - -
Gso7g1682 300 ProSitePatterns Ribosomal protein S5 signature. 161 193 IPR018192 -
Gso7g1682 300 Gene3D - 210 299 IPR014721 -
Gso7g1682 300 SUPERFAMILY Ribosomal protein S5 domain 2-like 214 292 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1682 Gso-Chr7 38876840 38879284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1682 144 284 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 4.73e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1682 K02988 - gmx:100787105 473.781