Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1674 ATGGAGAACAACCCTAGTTCATCAAGAACTGATACAAAATCCATTGAGCAGAATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTGTGCCTCATCAAAGCTCAAGGGAAGCCACATCGCAGCCGGATAAGATAGGTGAAGCCACAAATTACATAAAGAATTTACAGATTAAATTAGAGAAAATGAAGGAGAAAAGGAACAACCTAATAGACATTGAAAGGTCAAAAAATGCTAGCATGAATATGGGGTTGAAGTCTCCACAATTTAAGATCCAACAAATGGGTTCAGCCTTAGAGATTGTTCTAGTAACCGGGATGGATTGCCAATTCATGTTTGCATGGCAGAACATCTTCTTCCTAACAGAGACCATTCGTGCTCTTCAAGAAGAAGGATATGATATTGTTAATGCCAGTTATACAGTTGTTGAAAATGCAGTTTTCCATACAATACACTGTCAGGTAGGGGGATCTGCTAATGGAGCTTTGAGGATATCTGAGAAAATAAAGAAGTATCTCAATGGTTGCTAG 540 0.3833 MENNPSSSRTDTKSIEQNRRNQMKDLFSKLNSVVPHQSSREATSQPDKIGEATNYIKNLQIKLEKMKEKRNNLIDIERSKNASMNMGLKSPQFKIQQMGSALEIVLVTGMDCQFMFAWQNIFFLTETIRALQEEGYDIVNASYTVVENAVFHTIHCQVGGSANGALRISEKIKKYLNGC* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1674 179 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 177 IPR015660 GO:0003700|GO:0006357
Gso7g1674 179 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Gso7g1674 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 72 IPR036638 GO:0046983
Gso7g1674 179 SMART finulus 13 65 IPR011598 GO:0046983
Gso7g1674 179 Gene3D - 1 90 IPR036638 GO:0046983
Gso7g1674 179 PANTHER TRANSCRIPTION FACTOR BHLH162 1 177 - -
Gso7g1674 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Gso7g1674 179 MobiDBLite consensus disorder prediction 1 49 - -
Gso7g1674 179 Coils Coil 49 76 - -
Gso7g1674 179 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1674 Gso-Chr7 38745390 38750087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1674 3 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.267 4.13e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1674 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1674 - - gsj:114420666 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1674 7 38745390 38750087 Gso15g0646 15 5752269 5753871 PCT
Gso7g1674 7 38745390 38750087 Gso11g2650 11 42453990 42455643 PCT
Gso15g0646 15 5752269 5753871 Gso7g1674 7 38745390 38750087 PCT
Gso11g2650 11 42453990 42455643 Gso7g1674 7 38745390 38750087 PCT