Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1662 ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA 747 0.4632 MALEHYLSQEWKTSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1662 248 SMART ring_2 34 80 IPR001841 -
Gso7g1662 248 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Gso7g1662 248 CDD RING-HC_AtRMA_like 32 81 - -
Gso7g1662 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso7g1662 248 MobiDBLite consensus disorder prediction 1 21 - -
Gso7g1662 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
Gso7g1662 248 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Gso7g1662 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 248 - -
Gso7g1662 248 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gso7g1662 248 SUPERFAMILY RING/U-box 26 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1662 Gso-Chr7 38625788 38628500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1662 12 234 C3H Transcription Factor Family AT4G27470 38.767 3.55e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1662 K10666 - gmx:100779793 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1662 7 38625788 38628500 Gso15g0633 15 5636367 5638575 PCT
Gso7g1662 7 38625788 38628500 Gso11g2662 11 42577322 42579584 PCT
Gso15g0633 15 5636367 5638575 Gso7g1662 7 38625788 38628500 PCT
Gso11g2662 11 42577322 42579584 Gso7g1662 7 38625788 38628500 PCT