Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1661 ATGGCGAGTCGGTTCGGGTTATCGTCTTCGTCTTCCTCTGCGTCCAGCATGAGAGTTACCAACACGCCCGCGAGCGACCTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTCCGCAATTTCGCCGTCCCTGGCCACAATAACCTCTACCTCGCCGCCGTCGCCGATTCCTTCGTCTTATCTCTCTCTGCTCATGACACCATAGGCAGCGGTCAGATTGCGTTGAATGCCGTTCAACGCCGGTGTGCCAAAGTTTCTTCCGGTGATTCCGTACAAGTGAGCCGATTTGTGCCGCCTGAAGATTTCAACCTCGCACTGCTAACTCTTGAATTGGAATTTGTTAAAAAGGGGAGTAAGAGTGAGCAGATTGATGCTGTTCTACTGGCTAAGCAACTTCGTAAGAGATTTATGAACCAGGTTATGACTGTGGGGCAGAAAGTATTATTTGAGTATCACGGAAATAATTATAGCTTTACTGTCAGTAATGCTGCTGTTGAGGGCCAAGAAAAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGAGAGGGTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGCCTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCACCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGCCAAATTGGAAAAATTTTGAATGGGAAGGAACCCAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGTATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTACTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAGGATCTCACTAAGCCAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCACGAAGTTACTTCCGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTTGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGTTCCCGTGGCAGTGGTAAAACTGCACTTTCAGCTACTGTTGGTATCGACAGCGACTTCCCATACGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACACTGCTGGTTCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGCACAACAAGTGAACTAGATTTCTTGGAATCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATATTCCTACCTTGAACACAACGGATGCAAAGAAGGTCCTAGAACAGTTGAATGTGTTTACTGATGAAGATATTGATTCTGCTGCAGAGGCGTTGAATGATATGCCTATCAGGAAACTATACATGTTGATCGAGATGGCAGCGCAAGGGGAGCATGGTGGATCTGCAGAAGCCATCTTTTCTGGCAAAGAGAAGATTAGTATCGCTCACTTCTATGATTGCCTCCAGGATGTTGTTAGGTTATAA 2241 0.4302 MASRFGLSSSSSSASSMRVTNTPASDLALTNLAFCSPSDLRNFAVPGHNNLYLAAVADSFVLSLSAHDTIGSGQIALNAVQRRCAKVSSGDSVQVSRFVPPEDFNLALLTLELEFVKKGSKSEQIDAVLLAKQLRKRFMNQVMTVGQKVLFEYHGNNYSFTVSNAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAADVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVTSAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALSATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTTDAKKVLEQLNVFTDEDIDSAAEALNDMPIRKLYMLIEMAAQGEHGGSAEAIFSGKEKISIAHFYDCLQDVVRL* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1661 746 SMART AAA_5 535 673 IPR003593 -
Gso7g1661 746 SMART AAA_5 255 402 IPR003593 -
Gso7g1661 746 SUPERFAMILY Cdc48 domain 2-like 101 204 IPR029067 -
Gso7g1661 746 Gene3D - 101 199 - -
Gso7g1661 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 716 IPR027417 -
Gso7g1661 746 Gene3D - 401 488 - -
Gso7g1661 746 Gene3D - 497 668 IPR027417 -
Gso7g1661 746 Gene3D - 209 400 IPR027417 -
Gso7g1661 746 Pfam AAA+ lid domain 426 481 IPR041569 -
Gso7g1661 746 SUPERFAMILY ADC-like 16 98 IPR009010 -
Gso7g1661 746 Gene3D - 13 98 - -
Gso7g1661 746 Pfam Cell division protein 48 (CDC48), domain 2 124 187 IPR004201 -
Gso7g1661 746 Pfam ATPase family associated with various cellular activities (AAA) 540 653 IPR003959 GO:0005524|GO:0016887
Gso7g1661 746 Pfam ATPase family associated with various cellular activities (AAA) 259 399 IPR003959 GO:0005524|GO:0016887
Gso7g1661 746 PANTHER VESICULAR-FUSION PROTEIN NSF 63 746 IPR039812 GO:0016887|GO:0035494
Gso7g1661 746 PANTHER VESICULAR-FUSION PROTEIN NSF 12 43 IPR039812 GO:0016887|GO:0035494
Gso7g1661 746 PANTHER BNAA03G50350D PROTEIN 12 43 - -
Gso7g1661 746 PANTHER BNAA03G50350D PROTEIN 63 746 - -
Gso7g1661 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 497 IPR027417 -
Gso7g1661 746 CDD AAA 529 655 - -
Gso7g1661 746 CDD AAA 257 400 - -
Gso7g1661 746 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1661 Gso-Chr7 38610750 38622537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1661 223 474 Calmodulin-binding Proteins AT3G56690 33.071 3.70e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1661 K06027 - gmx:100779259 1431