Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1653 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGGAATCCTTCTGATACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGAATTTCTCTGATAAAGACCTGAGACTGGCCACTGATAACTATAATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGTATCGTGTACCAGGGAACCTTAAAAAATGGAAGGCAGGTAGCAGTGAAGACACTTTCAGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTAACTGAAATCAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAACCTAATCGCATATTGGTGTACGAATTTGTGGAAAATAACAGCCTTGATCGTGCATTACTAGGCTCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGCTATTTGCATGGGTACTGCAAGAGGTCTTGCATTTCTTCACGAAGAACATGTGCCACACATTGTGCACAGAGACATCAAGGCAAGCAACATACTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTGTTTCCAGATGACATCACTCACATTAGCACAAGGATAGCTGGAACAACTGGTTACTTGGCACCAGAGTATGCAATGGGTGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTTCTATTGGAATGGGCTTGGCAACTGTATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCAGACATGGTTGAATTCCCCGAGAAAGAGGTAATAAGGTACATGAAGGTTGCATTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAGGTTGTGGATATGCTGTCCAAGAACATGAGGCTGAATGAAAAGCAACTAACAGCACCAGGGTTGTTCCAGGATTCAGGAGCTTCCTCTCAAAAGAAGTCATCCTTTGAATCCACTGGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGGTGA 1104 0.4266 MSCGCFGASTLKKKRNPSDTPNEIDGFPLDNVKNFSDKDLRLATDNYNPSKKLGRGGFGIVYQGTLKNGRQVAVKTLSAGSKQGVREFLTEIKTISNVKHPNLVELVGCCVQEPNRILVYEFVENNSLDRALLGSRGSNIRLDWRKRSAICMGTARGLAFLHEEHVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGKLLELVDPDMVEFPEKEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKNMRLNEKQLTAPGLFQDSGASSQKKSSFESTGYQFSSNPSSITQLAPR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1653 367 MobiDBLite consensus disorder prediction 332 367 - -
Gso7g1653 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1653 367 MobiDBLite consensus disorder prediction 1 27 - -
Gso7g1653 367 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Gso7g1653 367 PANTHER - 1 359 - -
Gso7g1653 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Gso7g1653 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Gso7g1653 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gso7g1653 367 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Gso7g1653 367 PIRSF ILK 9 329 - -
Gso7g1653 367 CDD STKc_IRAK 53 319 - -
Gso7g1653 367 SUPERFAMILY Protein kinase-like (PK-like) 31 337 IPR011009 -
Gso7g1653 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gso7g1653 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1653 Gso-Chr7 38529567 38534489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1653 10 366 Receptor kinase-like Gene Family AT1G56120 47.911 3.54e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso7g1653 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1653 - - gmx:100775344 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1653 7 38529567 38534489 Gso15g0621 15 5511709 5515676 PCT
Gso7g1653 7 38529567 38534489 Gso11g2675 11 42712871 42723510 PCT
Gso15g0621 15 5511709 5515676 Gso7g1653 7 38529567 38534489 PCT
Gso11g2675 11 42712871 42723510 Gso7g1653 7 38529567 38534489 PCT