Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1633 ATGGCGGATGCTGACGTGGACCTTTCGGAACTGTTCTCTGGTAATGCCGACGAAGACGACGACATGTTTTATATAGATATTCAGACCGTCCAGAAGGTTCTTGATGAAGACGATGATTGTTACTTTCAGGAGACGGCATCATGTGATCCTTGTAGCCAACCTCAACTACAGAATAGTCCCGAGGATTCTTCATCAAAAAATGTTTCACCTAGTGAATCTGGCATTCATGACACTTTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCATATCTTTCTAAGTTGGGCTTTGCAAATTCAGTCACGAGCTGTTCTCCATTCTGCTCAGATGTGTCAGATTTCGGGGTCAGAGGTTCAGTTGGTGTATCTGATTCTGCAGCTAATTCTATGCTTGATTGTGAACGTGAAAACCAGGGACCTCAATCTCGGGCTTGCTCTTCCCCAAATGCTTTTCCTGGTAATTTCAGTGATTCATTTTCTCCAGGTGAAAGTGATGAGGTTTTTCGCACAGAAAGGACCCAAGTTTCTAAACATGAGATACCTGCATATAGTGTAGAAACAAGTTTCCCTGAGGCACAGTCAAACAATATATCAATTTGTGGAGATAATTTGAATCTGAGTATGTGGATTGGTGAAAATGAGAGCCAATTCAAGCATGTGAGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTAAATATTGAAGGTTATGTTGAAGACATCATTGCAGGAGTTTCTGGGCAACAGGAAAATGACTCGTGTACATCTTTTGAAGCATCATTTATGGATGCTGATAGATCTTTGCATGTCACAACTTCAACTGATTCTAGTGTTGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTACCATGTATCTCCAAACTGTTACCAGGGAACACATGATGGACCCTTTGTTGCTGACTCTTCTCTTGGTTTTGTGCCTAATGCTATTAATTCTCAATTGTGGCCATATGAAGAAATGATGAATAACATTAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATATATGAGTAATGGCATGCCTTCAAGCACTACTGGGTGGATGCCTTTTCAGGATAGTCAACTTATGTTAGCTGATAATGGTTATCCATCATTTCATTCTGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATTACCAGAACAATTTTCACCGTGATGATGCCGAGTTCAATGTAGGCCAAGAGGTGAAACAAACACCTGGTATTTTTTCTTCTGAAGGGTGTCAAGCTTACCAGTGTTTTCAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCATTGGCAGAACTGCTAGTTTTCAAGGAAACTTTGACAATTTGAATTTAAAAGCTGCAGATAATTCTTGGCTCCATCCCCAAGAACTAATTACCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGATTCAACATAACTTTATTGATTCTCATCTTTCAAAAGGAAGAACTGAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACGAGTCGACCCGCAGGCATTGGGAATTCCCTTAATATATCTCAATCTTGTAGATATGTTGGAAGTACGGTCGGAAGTACAAGGATGAAGGCATGTGATGAACGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCTGAAGTTAGTCCACCAGAAGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGATTCAAAAGGAAACATCAAGTTTAAATTGCTCAGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTACATTACTTAATGGGTGCACCACTGCCCGAAAAAGTGAATTGGAAACTCTGGATGTGGATGATGACATGCTTCCTCAGAATGGTATAGTAAAGGAAGAATCTAATATGTGTGAGGATAAGCCAAGTGGATATCCAATGAATTTGTTGAAGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCGACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGTAGCAAGGTAAATGGTCAGGCAACTCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACAAAAGATCCTTATGAGGTGGCCAAGCATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCCAGCTGACAAAGATGACGAGGAAAAGGAAATTTTTGAAGATCATGCTACACCAAGTAGGAAAAGAAAAAGCCCTTCTAATTCTAGTAAAAGTGGCAAGAAGAAATTGGATGGCACAAATCTTGAAGCTGTTGCTCGGCCACTTGCAAAGGTGTCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGACCATGCATCATTTTGTACTAGAATTAAGAACCCAATTAGCAGAAATCCAGCAAACGGGTATAGAAAGTTGCAAGCTGTCTTGAAGACAATAATGTTACGCCGAACGAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAGTATATAGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGTTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCTGAAGATGCAGTTGTCTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTTCTGGTGATGACAATCAGTGCCCTGCTGCAAATTGCAAAAGTCAACTGAGCACATCTATGGTATTTTCAAAAGCCACACTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCCAGTTGCTCTGGTCCTGAAGCCGAAGAAGCTGAACCTTGGTCCGAAAGTAAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTGTGTAAGCCACAGTGCTACACATCAAAAAGTACTTCTGAGCATAGCACTTTCAGGGAAGATAAAAATTGCCTTGGGAACCCCTCCATTGCTAAGAATGGGAAATCCTTAAAAGATTCTCCTGAGAGTCAAAATTTGTCTGATGAGAATAGAAGCTCTAATGCTTCAGTTACTGTTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCAATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACAATTGTCCCGAGGTAACTGTTATAATTATGTCTTTGAAAGCTGCCAGTCTTGGTCTCAACTTGGTAGTAGCATGCCATGTTCTTATGTTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGCCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGACTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4080 0.4083 MADADVDLSELFSGNADEDDDMFYIDIQTVQKVLDEDDDCYFQETASCDPCSQPQLQNSPEDSSSKNVSPSESGIHDTFQIQNGSQVLEEPYLSKLGFANSVTSCSPFCSDVSDFGVRGSVGVSDSAANSMLDCERENQGPQSRACSSPNAFPGNFSDSFSPGESDEVFRTERTQVSKHEIPAYSVETSFPEAQSNNISICGDNLNLSMWIGENESQFKHVREDVESEHASLSSIVDNDDVNIEGYVEDIIAGVSGQQENDSCTSFEASFMDADRSLHVTTSTDSSVGQGSHVSSDFIDYHVSPNCYQGTHDGPFVADSSLGFVPNAINSQLWPYEEMMNNIKAENVELNADIAYMSNGMPSSTTGWMPFQDSQLMLADNGYPSFHSGNFDDMSSLSLSACASYMSYGDHYQNNFHRDDAEFNVGQEVKQTPGIFSSEGCQAYQCFQNEDNYAVISGISNQYQDSIGRTASFQGNFDNLNLKAADNSWLHPQELITSEKQFGCVKREGGIQHNFIDSHLSKGRTENFHVEEDPDVCIIEDISHPAPTSRPAGIGNSLNISQSCRYVGSTVGSTRMKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMIQKETSSLNCSGGILADDQGLGKTVSTIALILKERPTLLNGCTTARKSELETLDVDDDMLPQNGIVKEESNMCEDKPSGYPMNLLKQAKGRPSAGTLIVCPTSVLRQWAEELRSKVNGQATLSVLVYHGSNRTKDPYEVAKHDVVLTTYSIVSMEVPKQPPADKDDEEKEIFEDHATPSRKRKSPSNSSKSGKKKLDGTNLEAVARPLAKVSWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSDHASFCTRIKNPISRNPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEVSLALCSICNDPPEDAVVSVCGHVFCNQCICEHLSGDDNQCPAANCKSQLSTSMVFSKATLNSCLSDQGCDNSPSCSGPEAEEAEPWSESKPYDSSKIKAALEVLKSLCKPQCYTSKSTSEHSTFREDKNCLGNPSIAKNGKSLKDSPESQNLSDENRSSNASVTVVGEKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNNCPEVTVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRMMVASAFGEDGTGDRQTRLTVDDLKYLFMM* 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1633 1359 Pfam SNF2-related domain 628 1003 IPR000330 GO:0005524|GO:0140658
Gso7g1633 1359 MobiDBLite consensus disorder prediction 136 164 - -
Gso7g1633 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 926 IPR027417 -
Gso7g1633 1359 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 546 1358 - -
Gso7g1633 1359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1105 IPR013083 -
Gso7g1633 1359 MobiDBLite consensus disorder prediction 776 817 - -
Gso7g1633 1359 SMART ring_2 1042 1080 IPR001841 -
Gso7g1633 1359 MobiDBLite consensus disorder prediction 1172 1196 - -
Gso7g1633 1359 Gene3D - 701 788 IPR038718 -
Gso7g1633 1359 Gene3D - 802 927 IPR038718 -
Gso7g1633 1359 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 546 1358 - -
Gso7g1633 1359 Pfam Helicase conserved C-terminal domain 1201 1301 IPR001650 -
Gso7g1633 1359 MobiDBLite consensus disorder prediction 51 76 - -
Gso7g1633 1359 CDD SF2_C_SNF 1204 1311 - -
Gso7g1633 1359 Pfam Zinc finger, C3HC4 type (RING finger) 1042 1078 IPR018957 GO:0046872
Gso7g1633 1359 CDD DEXDc_SHPRH-like 609 926 - -
Gso7g1633 1359 ProSitePatterns Zinc finger RING-type signature. 1057 1066 IPR017907 -
Gso7g1633 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1358 IPR027417 -
Gso7g1633 1359 SMART ultradead3 605 903 IPR014001 -
Gso7g1633 1359 SMART helicmild6 1218 1301 IPR001650 -
Gso7g1633 1359 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1195 1354 IPR001650 -
Gso7g1633 1359 SUPERFAMILY RING/U-box 1040 1102 - -
Gso7g1633 1359 Gene3D - 1106 1357 IPR027417 -
Gso7g1633 1359 ProSiteProfiles Zinc finger RING-type profile. 1042 1081 IPR001841 -
Gso7g1633 1359 MobiDBLite consensus disorder prediction 136 166 - -
Gso7g1633 1359 Gene3D - 577 673 IPR038718 -
Gso7g1633 1359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 624 888 IPR014001 -
Gso7g1633 1359 MobiDBLite consensus disorder prediction 779 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1633 Gso-Chr7 38231820 38240571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1633 535 1358 RAD5 or RAD16-like Gene Family AT1G61140 60.973 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso7g1633 SNF2_N 1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1633 - - gmx:100802436 2391.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1633 7 38231820 38240571 Gso15g0605 15 5361468 5370247 PCT
Gso7g1633 7 38231820 38240571 Gso11g2693 11 42888243 42897611 PCT
Gso15g0605 15 5361468 5370247 Gso7g1633 7 38231820 38240571 PCT
Gso11g2693 11 42888243 42897611 Gso7g1633 7 38231820 38240571 PCT