Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1615 ATGCGGAGTTTCACTTTCTTTGATCGAGTTTCTAGAGCTTTCCGCGATCATGGGTCCAACTTCAAGCTTGTACTCCTCTGCACCACCGTAAGTGGTGGAGGGATTGTAGCTTACGGAGAGGCTGTTGCCGCATCTGAAGCAGCGGCGGCGGCGACGGAGAAGAAAAAGGTGGTGGTGCTGGGAACTGGGTGGGCTGGCACGAGTTTCTTGAGGAACCTGGACAACCCCAAATATGAGGTTCATGTGGTCTCCCCTCGCAATTACTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGTGGCACCGTGGAAGCTCGCAGCATTGTCGAACCCGTCCGCAATATTTTCAGGAAGAAAAAGATGGACATGCAATTTAGTGAAGCAGAATGTCTCAAGATTGACGCAGCACACAGGAAGGTTTACTGTCGATCTAATATAAGTAATAATTTGAACGAGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCCGGAGTGATGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAAAAGATTAGAAGAACCGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTAGTGTAAGTGAAGAAGAAAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCACTACATGACTATGTCACTGAGGATTTGGTCAACATATATCCTGGGATAAAAGATCTAGTTAAAATTACCCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGATAAAAGAATTACTGCTTTTGCTGAAGAGAAGTTCGGAAGAGATGGTATTGATGTGAAAACTGGATCCATGGTTGTGAAGGTATCCGAGAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGCAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGACTAACAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACTAACAACGTGTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATCGCAGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTTACTGTCAAAGAATTTCAGGAGGTATTGGATGATATCTGTGAGAGATACCCTCAGGTAGAGCTATATCTAAAGAGTCAACAGATGCACAACATTGCTGATTTGTTGAAAGGGTCCAAGGAAGATGTTGAAAAAGAATCTATTGAACTGAACATCGAAGAACTAAAAACCGTACTCTCTAAAGTGGATTCCCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCCAAGTGCTTTAATCGGATGGAAGAGTGTGAGAAAAACCCAGAGGGTCCCATCAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTTGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAATGGCTGTGGTATTCTGTCTATGCAAGTAAACAAGTCAGCTGGCGCACAAGGGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGATTCAAGTCAAATCTGA 1743 0.436 MRSFTFFDRVSRAFRDHGSNFKLVLLCTTVSGGGIVAYGEAVAASEAAAAATEKKKVVVLGTGWAGTSFLRNLDNPKYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKMDMQFSEAECLKIDAAHRKVYCRSNISNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDYVTEDLVNIYPGIKDLVKITLLEAGDHILSMFDKRITAFAEEKFGRDGIDVKTGSMVVKVSEKEISTKEMKNGGAITTIPYGMAVWSTGIGTRPFIRDFMSQIGQTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVELYLKSQQMHNIADLLKGSKEDVEKESIELNIEELKTVLSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1615 580 Coils Coil 442 462 - -
Gso7g1615 580 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Gso7g1615 580 PANTHER NADH DEHYDROGENASE 3 580 IPR045024 GO:0003954|GO:0006116
Gso7g1615 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Gso7g1615 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Gso7g1615 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Gso7g1615 580 SMART efh_1 382 410 IPR002048 GO:0005509
Gso7g1615 580 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Gso7g1615 580 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
Gso7g1615 580 Gene3D - 424 579 - -
Gso7g1615 580 Gene3D - 45 406 - -
Gso7g1615 580 SUPERFAMILY EF-hand 333 467 IPR011992 -
Gso7g1615 580 SUPERFAMILY FAD/NAD(P)-binding domain 216 375 IPR036188 -
Gso7g1615 580 PANTHER NAD(P)H DEHYDROGENASE B2 3 580 - -
Gso7g1615 580 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1615 Gso-Chr7 37984743 37990205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1615 1 580 EF-hand Containing Proteins AT4G05020 69.823 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1615 K03885 - gmx:100809915 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1615 7 37984743 37990205 Gso8g0498 8 4565630 4572312 GST
Gso7g1615 7 37984743 37990205 Gso15g0581 15 5126036 5131167 PCT
Gso7g1615 7 37984743 37990205 Gso11g2718 11 43120934 43126296 PCT
Gso15g0581 15 5126036 5131167 Gso7g1615 7 37984743 37990205 PCT
Gso11g2718 11 43120934 43126296 Gso7g1615 7 37984743 37990205 PCT