Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1613 ATGGGCGACGAAGAAGTATTCGCCGGAGCTTCGGGTCTCCGGCGAGCGGTGGAGCTAATCTTTTCCGTGCTCTCACTCTCGCACTCGATTCGCGTCTTCGCCGGAAAATGGCAGCTGATTCGGGCCAAGCTGGAGGAGCTCCACGGCGGTCTAATCGCCGCCGAGAACTGCGACTCCGGCGACAGCCCGTCGCTGTCGAGGCTGGCGGAAGCGGTGGCGGTCACCTCGACGGAGTGCCGCGATCTTTGCCGGCGCTGCGTGGACGTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGACGCGCACGCGAAGAAGCTCAGTGAGATATACAAGACTGGAATTTTAACAAATGGGTTCGCGTTGGTGGTTTCAAAACCGAACCTTGGCGCTTCAAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGGTTGGGGATTTGGGTATGAAGCGGCAAGCGCTGAAGAATCTTCTGGAAGTTGTGGTGGAGGATGAGAAGTACGTGAAGGTGATTGTGGATGTTGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGGTCTAACGAGGTGGAGATTCAGGAGGAGAGTGCTAAGGTTGTTTCTGTTGTTGCGGGGTTTGATTCCTACAAAGGGGTTTTGGTTTGTGCGGGTGTGATTGCTCCTTTGGTTAAGGTTTTGGATTGTGGAAGTGTTTTAGGGAAGATTGCGGCTGCTAGGTGTTTGGTGAAGTTAACTGAGAATTCGGATAATGCTTGGTGTGTTTCTGCTCATGGAGGGGTTAGTGTGTTGTTGAAGATATGTGGTGGTGGTGATTGTGGTGGTGATTTGGTTGGGCCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGTGTTGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGTGGTAACATTCATTAGGCTTGTGAGGTCCAAGGAGGAAGCGATTCAGGTGAATTCGATAGGGTTTATTTTGAGTATTGCTTCTGGGGATGAATTGGTTAGGCAGATGGTGATCAAAGAGGGAGGGATTCGCGCTTTGTTGCGTGTTTTGGATCCTAAGTGGTCTTATTCTTGTAAAACCAGGGAGGTGACAATGAGGGCTGTTGAGGATTTGTGTTTTTGTTCGCCTAGTTCTGTTGGGGTGTTGATGAATTATGGTTTTGTGGATCAGTTGATATATTATGTTAGAAACGGCGAGGTTTCGATTCAGGAGTTGGCATTGAAGGTGGCGTTTAGGCTGTGTGGAACATCGGAGGAGGCCAAGAAAGCAATGGGGGATGCTGGGTTTATGCCGGAGTTTGTTAAGTTTCTCAATGCAAAGTCATTCGAGGTTCGCGAAATGGCGGCCGAGGCACTCTCTGGCATGGTTATAGTGCCTAGAAATAGAAAGAGGTTTGTGCAGGATGACCATAACATAGCCCTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCAGGTAACAAAAAGTTCTTAATCTCTATATTGATGTCCTTAACGAGTTGCACTAGTGGGAGGAAAAAGATTGTTAGTTCCGGATATGCAAAAAACATAGAAAAACTTGCGGATGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTCAAGAAGCTATCCACAAACCGGTTCCGCAGCATGTTGAGTGGAATCTGGCACTCGTGA 1704 0.493 MGDEEVFAGASGLRRAVELIFSVLSLSHSIRVFAGKWQLIRAKLEELHGGLIAAENCDSGDSPSLSRLAEAVAVTSTECRDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHAKKLSEIYKTGILTNGFALVVSKPNLGASKEDMRFYVRDLTTRMKVGDLGMKRQALKNLLEVVVEDEKYVKVIVDVGDVVHLLVGFLGSNEVEIQEESAKVVSVVAGFDSYKGVLVCAGVIAPLVKVLDCGSVLGKIAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGGDCGGDLVGPACGVLRNLVGVEEIKRFMVDEGAVVTFIRLVRSKEEAIQVNSIGFILSIASGDELVRQMVIKEGGIRALLRVLDPKWSYSCKTREVTMRAVEDLCFCSPSSVGVLMNYGFVDQLIYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMPEFVKFLNAKSFEVREMAAEALSGMVIVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCTSGRKKIVSSGYAKNIEKLADAEVSSDAKRLVKKLSTNRFRSMLSGIWHS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1613 567 Pfam Armadillo/beta-catenin-like repeat 433 468 IPR000225 GO:0005515
Gso7g1613 567 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 567 - -
Gso7g1613 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 315 IPR000225 GO:0005515
Gso7g1613 567 SUPERFAMILY ARM repeat 154 545 IPR016024 -
Gso7g1613 567 Gene3D - 147 556 IPR011989 -
Gso7g1613 567 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 567 - -
Gso7g1613 567 SMART arm_5 345 388 IPR000225 GO:0005515
Gso7g1613 567 SMART arm_5 432 472 IPR000225 GO:0005515
Gso7g1613 567 SMART arm_5 219 259 IPR000225 GO:0005515
Gso7g1613 567 SMART arm_5 177 218 IPR000225 GO:0005515
Gso7g1613 567 SMART arm_5 260 302 IPR000225 GO:0005515
Gso7g1613 567 SMART arm_5 303 343 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1613 Gso-Chr7 37952164 37954662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1613 159 362 U-box Gene Family AT2G23140 25.000 4.39e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1613 - - gmx:100809382 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1613 7 37952164 37954662 Gso8g0500 8 4600878 4603417 GST
Gso7g1613 7 37952164 37954662 Gso15g0580 15 5115096 5117284 PCT
Gso7g1613 7 37952164 37954662 Gso11g2719 11 43134416 43136794 PCT
Gso15g0580 15 5115096 5117284 Gso7g1613 7 37952164 37954662 PCT
Gso11g2719 11 43134416 43136794 Gso7g1613 7 37952164 37954662 PCT