Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1610 ATGGGTAGATCACCTTGTTGTAACAAAAATGGCCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAACTTATTGATTACATTCAGAAACATGGGTACGGCAATTGGAGAGTACTCCCAAAGAATGCTGGTTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCAATTCACTTTTGAAGAGGAAGAGACTATAATACAGCTACATAGCATTCTTGGCAACAAGTGGTCAGCTATTGCTTCTCGCTTACCCGGAAGAACAGACAATGAAATCAAGAATTACTGGAACACCCACATTAGAAAAAGGCTTCTAAGGATGGGAATTGACCCTGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTATCTTCCATCTTAAGTTCAACCCTCTACGGTTCAACACAAATGAACATCCAAAGACTTCTTGGCACTAACACAGTGGTGAACCCTGAGCTTCTAAAGTTGGCCTCGTCACCCTTCCCCTCTCTGCAGCAACGCCAACACCAAAACATGTGTGCACAAAATTGTGAAGAGAACCATCTCTGTGACCCCCAAATTCAGAACCAAATCCCTCAGGACTTGGCTCAAGAAGCATTGCCTTTCAATCATACACAGTTTGTTGAATCCAATATGAATATTATTCCATACCCTTCAATTTTCCAAGACTCTAGCTTCCAACAACATTCTCAACCAAGTGATTTGCATTGCAACGGAATTGATCATACAAGTTATGTTCCTCAATTACCAAACTATGATTACCCTCCAATTTCTGAACTCTCAACTTATAACAATTCCTATAACAACAACCAGAACTTCAGCTACACTTCAGTTCTCTCAACGCCTTCTTCAAGTCCCACACCGTTGAATTCGAACTCGACGTATGTCAATGGGTGCAGCAGCACTGAGGATGAGACAGAAAGCTATGTCAGTAGCAACAACTTGTTGAGATTTGAAATCCCAGATATGCTATACGTATGA 1017 0.4208 MGRSPCCNKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGQFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSTLYGSTQMNIQRLLGTNTVVNPELLKLASSPFPSLQQRQHQNMCAQNCEENHLCDPQIQNQIPQDLAQEALPFNHTQFVESNMNIIPYPSIFQDSSFQQHSQPSDLHCNGIDHTSYVPQLPNYDYPPISELSTYNNSYNNNQNFSYTSVLSTPSSSPTPLNSNSTYVNGCSSTEDETESYVSSNNLLRFEIPDMLYV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1610 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 - -
Gso7g1610 338 PANTHER TRANSCRIPTION FACTOR MYB41 1 336 - -
Gso7g1610 338 CDD SANT 16 61 IPR001005 -
Gso7g1610 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso7g1610 338 CDD SANT 70 112 IPR001005 -
Gso7g1610 338 Gene3D - 69 116 - -
Gso7g1610 338 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso7g1610 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso7g1610 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso7g1610 338 SMART sant 66 114 IPR001005 -
Gso7g1610 338 SMART sant 13 63 IPR001005 -
Gso7g1610 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso7g1610 338 Gene3D - 13 66 - -
Gso7g1610 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso7g1610 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1610 Gso-Chr7 37897465 37899237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1610 1 338 MYB Transcription Factor Family AT4G21440 52.044 1.33e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g1610 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1610 K09422 - gmx:100808310 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1610 7 37897465 37899237 Gso8g0503 8 4653094 4654856 GST
Gso7g1610 7 37897465 37899237 Gso15g0575 15 5087624 5089570 PCT
Gso7g1610 7 37897465 37899237 Gso11g3011 11 45952272 45954640 PCT
Gso15g0575 15 5087624 5089570 Gso7g1610 7 37897465 37899237 PCT
Gso11g3011 11 45952272 45954640 Gso7g1610 7 37897465 37899237 PCT