Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1608 ATGTCGAAAACTCCGAAGGAGAAAGACGCGGAGGAGCCTCTGCCGGACCACCTCCGGTGCGGGCGCACCGATGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAGAATCTCAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCCGAGTCGCTGAAGCTTCAGCGCAAGCGCAAATCAAACAACGACGAAGAAGAGGAACCCGAGCCTGACAACAACAACAACAACAATGTTCTCGACGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCATGCTTTCCGGGGATTCCGATGATGGTTCTCCGGCGAGGAAGAAGGCGCTGAAGCAGGGCGATATGCAGCTGGAGCTCTTGAGGATGGTGCTGAAGAGAGAGGCTGAGAAGAAGAAGAGCAAGAACAAGAGAAATAATAACAACAAGAAGAAGAACAATAAGAAGAAGGAGAATAAGAAGAAGAAGGAGGAAAAAGAGGAATTGTGTTACACTAAAGAAGAGTTGAGAAGAGAATTGCCCAACGGTGTGATGGAAATCTCTCCGGCTTCGCCGACGCGTGATTACAACAATGTGGGTTCGCATTGTGATGTGAAAGTTGGTGTTGATAGTAAAACTGTTGCTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCGGGGAAGTTGCAGATTGTCCCGTATGGATCAAAGGGTAAGAGGAAGAAATGTCATTGGTGCCAGAGAAGTGAGTCTGGGAATCTCATTCAGTGTTTGAGCTGTCAGAGGGAGTTCTTCTGCATGGATTGCGTAAAAGAGCGGTATTTTGACACTCAAAATGAAATTAAGAAGGCATGTCCAGTTTGTTGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAAAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAGTAAAGATCAGAACATTGAGCTAGAAGCAGAAGCAAAAGTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGGATTTGGCTACAATGAGAAAAACTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTAGTTGCTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGGAGAAATTAACTCATCTGTGTTCAAGCGACCTGGTAAAATGAAACCTTGTGGTGCTAATGAGAGCCATAACTTGGATGAGAAAGCCACATCTAGTGGCAATTTAACTGATACTTCAATGTTGCCCGAGTGGAAAAATGGTAATGGCATTGATACTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCGAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCGTTGTGTTTTGACACTGATCACAGTACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGATGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGTGGAAAAGGCCATCCTATAGTTGTCCAAGATGCACTCCGAAGTACATCAAACCTCAGTTGGGATCCACTGACCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAAAAATAAAGACTTGCTTGAATCTTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTCAAACGTCGTCCTCAGAGAAACACTTGGGATGAGATGCTGAAACTAAAAGGGTGGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTAAAGAATACATGCATCCCCTGTCCGGTCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACATTGGGCCATATGTCTACATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCAGTGACAAAGCTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTATAGAACAACTTACCAAAATAAGAAAACTGCTGAAAAAGCACAAAACTCTGTGTCAAATGGAGACTATTGCTACTGAGGGGCCACAGGAACAGAAATTGAATGGAATACCATTATTGCATGGTCCAGAAACAGAGCGAAAAGGCTCACGGAGTATGGTTGAAGGAATGAACTTTTTCCGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATGGGGAATGTGATTTCATTTCTGATTCTGATTCTGGATCTGCTTTACTTCTCCTTGGGACTGTTCAAACTGCTGAATTGTCAGAACACGATAATCCTAGAAATCCCTTTAAAAGCTCAAAAAGACATAAAAATAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCATCGAATACCTTGAAAGACACTATGATGAATTTTCTTATACCCATGACTATCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTAGACAGTACTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGACTTTTCAGCAACATGTTGGACAAGCTGTCGTCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTCTAGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGGGTATCCAGTTGTTCGATGAGGTCCGACTATTGCCTGAAGACCATAAAGCAAAAGCAGACATGCTGGAGGTTAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCAACTTACAAGCAAAACATGA 3093 0.4268 MSKTPKEKDAEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKSNNDEEEEPEPDNNNNNNVLDDNVESRARRTSRIVKKKRMLSGDSDDGSPARKKALKQGDMQLELLRMVLKREAEKKKSKNKRNNNNKKKNNKKKENKKKKEEKEELCYTKEELRRELPNGVMEISPASPTRDYNNVGSHCDVKVGVDSKTVAPRYFRSKNVDRVPAGKLQIVPYGSKGKRKKCHWCQRSESGNLIQCLSCQREFFCMDCVKERYFDTQNEIKKACPVCCGTCTCKDCSASQCKDSESKEYLTGKSKVDRILHFHYLICMLLPVLKQISKDQNIELEAEAKVKGKNISDIQIKQVGFGYNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKASGEINSSVFKRPGKMKPCGANESHNLDEKATSSGNLTDTSMLPEWKNGNGIDTLSCPPTELGGCGKSHLELRSVFPSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLQEAALREDSNDNYLFCPTVMDISGDNFEHFQKHCGKGHPIVVQDALRSTSNLSWDPLTMFCTYLEQSITRYEKNKDLLESCLDWWEVEINIRQYFTGSVKRRPQRNTWDEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVKEYMHPLSGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDAPLSIEQLTKIRKLLKKHKTLCQMETIATEGPQEQKLNGIPLLHGPETERKGSRSMVEGMNFFRRVNRTSCISTEAKKVSSQSMDSNGECDFISDSDSGSALLLLGTVQTAELSEHDNPRNPFKSSKRHKNKFTEHLGAQWDVFRRQDVPKLIEYLERHYDEFSYTHDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGQAVVIPAGCPYQIRNSKSSVHAVLEFVSPENVTEGIQLFDEVRLLPEDHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1608 1030 ProSiteProfiles Zinc finger RING-type profile. 252 297 IPR001841 -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 144 165 - -
Gso7g1608 1030 Pfam JmjC domain, hydroxylase 879 970 IPR003347 -
Gso7g1608 1030 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1029 IPR045109 GO:0032454|GO:0033169
Gso7g1608 1030 SMART cupin_9 666 993 IPR003347 -
Gso7g1608 1030 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Gso7g1608 1030 PANTHER PROTEIN B160 11 1029 - -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 49 74 - -
Gso7g1608 1030 Pfam WRC 15 56 IPR014977 -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 442 459 - -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 1 26 - -
Gso7g1608 1030 Gene3D Cupin 554 1002 - -
Gso7g1608 1030 SUPERFAMILY Clavaminate synthase-like 565 1016 - -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 105 143 - -
Gso7g1608 1030 ProSiteProfiles JmjC domain profile. 685 993 IPR003347 -
Gso7g1608 1030 Coils Coil 139 185 - -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 49 173 - -
Gso7g1608 1030 MobiDBLite consensus disorder prediction 434 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1608 Gso-Chr7 37870999 37877187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso7g1608 JmjC 6.3e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1608 K15601 - gmx:100787798 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1608 7 37870999 37877187 Gso8g0505 8 4671911 4678434 GST
Gso7g1608 7 37870999 37877187 Gso15g0573 15 5067769 5073483 PCT
Gso7g1608 7 37870999 37877187 Gso11g2724 11 43188624 43194546 PCT
Gso15g0573 15 5067769 5073483 Gso7g1608 7 37870999 37877187 PCT
Gso11g2724 11 43188624 43194546 Gso7g1608 7 37870999 37877187 PCT