Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1600 ATGGACTCACATCTCCCCGACCACTTCAAGTGTCCAATTTCCCTCGAAATAATGTCGGACCCTGTCATTCTCTCTTCGGGTCACACCTTCGACCGTTCCTCCATCCAACGTTGGCTCGACGCGGGTCACCGAACATGTCCAATTACCAAACTACCCCTCCCCGACCACCCCGCCCTCATCCCCAACCACGCGCTGCGAAGCTTAATCTCCAACTACGCATTCCTCTCACCTCTCCACCATACCGTTTCCCAACCCGAAGCCCTAATTTCAACCCTCGCCTCCAATTCTTCGTCTTCCGATTCCAAAATTGAGGCTCTTAAGCACCTCACGCGCTTATCCAAGCGCGACTCGGCGTTCCGGCGGAGGCTGGCGGAGTCCGGCGCCGTCCCCGCCGTGATCGCCGCCGTGGACGACCCGAGCCTCCAGGAGAGGGCGCTCCCGCTCCTCCTCAACCTCACCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAAGGCGTGGTCGCGCGCGTGGTGGAGGTGCTCCTCCACGCGCCGACGCCGGACTGCCGCGCCGTTGCGGCCACCATCGTCACGAGCCTCGCGGTCGTCGAGGTGAATAAGGCCACCATCGGCGCGTTTCCGGCGGCGATCGCGGCGCTCGTGGCGATCCTCCGCGACGGCAAGGGGCGGGAGAGGAAGGAGGCCGCCACCGCTCTCTACGCGCTCTGCTCTTTTCCGGATAACCGGAGAAGAGCCGTCAATTGCGGCGCCGTGCCGATTCTCCTCCAAAACGTCGAAATTGGACTTGAACGCTGTGTTGAGGTAATTGGATTTTTGGCAAAATGCAAAGAAGGGAGAGAACAAATGGAATGTTATGACGGTTGCGTTCAGATTCTGGTTAACGTTTTGAGGAATGGTAGCTCGAGGGGGATTCAATATGCACTCTTTGCACTCACTTCGCTTTGCTCTTATAACCAGGAAATGGTTCTGGTGGCTCTGGAAGAAGGGGTTCTAGAAGCTTCTCTTGGGTTTGTGGAAGATGATAATGAGAAAGTGAGGAGGAACGCGTGTAATTTGATTAAGGTTTTGCGTTTCAACCACAATCGGGTGAGGTGA 1098 0.5747 MDSHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHPALIPNHALRSLISNYAFLSPLHHTVSQPEALISTLASNSSSSDSKIEALKHLTRLSKRDSAFRRRLAESGAVPAVIAAVDDPSLQERALPLLLNLTLDDDSKVGLVAEGVVARVVEVLLHAPTPDCRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLQNVEIGLERCVEVIGFLAKCKEGREQMECYDGCVQILVNVLRNGSSRGIQYALFALTSLCSYNQEMVLVALEEGVLEASLGFVEDDNEKVRRNACNLIKVLRFNHNRVR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1600 365 PANTHER U BOX DOMAIN-CONTAINING 1 358 - -
Gso7g1600 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Gso7g1600 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Gso7g1600 365 SUPERFAMILY ARM repeat 87 358 IPR016024 -
Gso7g1600 365 SMART arm_5 155 196 IPR000225 GO:0005515
Gso7g1600 365 SMART arm_5 116 154 IPR000225 GO:0005515
Gso7g1600 365 SMART arm_5 276 317 IPR000225 GO:0005515
Gso7g1600 365 SMART arm_5 319 359 IPR000225 GO:0005515
Gso7g1600 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Gso7g1600 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Gso7g1600 365 Gene3D - 71 262 IPR011989 -
Gso7g1600 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 358 - -
Gso7g1600 365 SUPERFAMILY RING/U-box 4 72 - -
Gso7g1600 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Gso7g1600 365 Gene3D - 263 365 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1600 Gso-Chr7 37808085 37809722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1600 1 357 U-box Gene Family AT4G21350 60.054 1.37e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1600 - - gmx:100785141 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1600 7 37808085 37809722 Gso8g0513 8 4743774 4745371 GST