Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1573 ATGGAGATTTCATCCATCAGAGGGTTACCTGATGATATGGAAATAATGGAGGACGCTACCTTTCTCCATCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTACCAATAGCTGCTGCTTTTGGAGAAACATTACAACATCATGCATTCAGTACTTATCCAAACTTCAACCCCAAAACTTCCATGGAAACTACACTTGCTGACGATGAAAGAGGCACAAAACACCACAGAAACATCAGCTTGAATCCCAATAGCAAAAGTGCTCAGACATCATCAGAGACACAATTTGTCTCTTTCCCAAATCTTTTCTCATTTGTTGATTCCAATCACACAACTCCTCCACCTGACACTATCTCTCAAGGAACCTTGGGGAATCATAATAACTATGTCTTCAAGGCATGCCAAGAAGCCAAAAAGACTGGGAAACGTTATAAACATTCTCAACCTCAAGACCACATCATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTATCTGCCCTTGTTCCTGGACTACAGAAGCTGGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAATTGCAGGAGAAAGTAAACGCTCTTGAGGAGGAACAAAACATGAAGAAAAATGTGGAGTCTGTGGTAATTGTGAAGAAATGTCAACTATCCAATGATGTTAACAACTCTTCTTCAGAACATGATGGTTCATTTGACGAGGCACTGCCTGAAATTGAAGCAAGATTTTGTGAGAGAAGTGTCCTCATAAGAGTACACTGTGAGAAGAGCAAAGGAGTTGTAGAAAACACAATCCAGGGAATTGAGAAACTTCATCTAAAAGTCATCAATAGCAATACCATGACATTTGGAAGATGTGCCCTTGATATAACAGTTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTACATCTTTCATGTGA 984 0.4085 MEISSIRGLPDDMEIMEDATFLHQWHLSSIDDPNLLPIAAAFGETLQHHAFSTYPNFNPKTSMETTLADDERGTKHHRNISLNPNSKSAQTSSETQFVSFPNLFSFVDSNHTTPPPDTISQGTLGNHNNYVFKACQEAKKTGKRYKHSQPQDHIIAERKRREKLSQRFIALSALVPGLQKLDKASVLGDAIKYLKQLQEKVNALEEEQNMKKNVESVVIVKKCQLSNDVNNSSSEHDGSFDEALPEIEARFCERSVLIRVHCEKSKGVVENTIQGIEKLHLKVINSNTMTFGRCALDITVIAQMDMEFCMGVKDLVRNLRSAFTSFM* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1573 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Gso7g1573 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 212 IPR036638 GO:0046983
Gso7g1573 327 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Gso7g1573 327 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 111 - -
Gso7g1573 327 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 112 326 - -
Gso7g1573 327 SMART finulus 154 203 IPR011598 GO:0046983
Gso7g1573 327 CDD bHLH_AtNAI1_like 151 222 - -
Gso7g1573 327 Gene3D - 144 222 IPR036638 GO:0046983
Gso7g1573 327 MobiDBLite consensus disorder prediction 72 92 - -
Gso7g1573 327 PANTHER BHLH TRANSCRIPTION FACTOR 112 326 - -
Gso7g1573 327 PANTHER BHLH TRANSCRIPTION FACTOR 2 111 - -
Gso7g1573 327 Coils Coil 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1573 Gso-Chr7 37514158 37517004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1573 148 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 9.98e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1573 HLH 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1573 - - gmx:100799262 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1573 7 37514158 37517004 Gso15g0526 15 4730713 4734353 PCT
Gso7g1573 7 37514158 37517004 Gso11g2780 11 43578582 43581819 PCT
Gso15g0526 15 4730713 4734353 Gso7g1573 7 37514158 37517004 PCT
Gso11g2780 11 43578582 43581819 Gso7g1573 7 37514158 37517004 PCT