Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1549 ATGGATAACAGCCTGAACAATCCGAGCGACAACGGGGAAGACCCGCCACCGCCGCCGCCGGTTCCCATGCAAGTCGACGGCTTCCAACCGTTCCATTACGCCAATTGTTCCGATGAAGGGGAAGAAGCCGTTCCGGTCACCAATGCTTCTTCTGCTATGCACGCCAGAGCCAGCGAACTCACCATTTCCTTCGAAGGCGAAGTCTATGTTTTCCCAGCAGTTACGCCGGAAAAGGTGCAGGCCGTATTATTACTCTTGGGAGCGCAGGAAATGACAAATAGTGCCCCCACCTCTGACATTTTGCTGCAGCAAAACTATCAGGACATTAGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTATTCTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCAATGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAAGCCGAACATTCTTTTGCTAAGCAGGACAAGGAGGGAAGCCCTGAAGAAACTAAGCCTGTGCAAATGGATTCCAGTCGGTCACCTGAGAAGACAAATGACCAGTTTATTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTACATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCCGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGATCAGGTTGACATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1068 0.4691 MDNSLNNPSDNGEDPPPPPPVPMQVDGFQPFHYANCSDEGEEAVPVTNASSAMHARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMTNSAPTSDILLQQNYQDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASMKEDYKSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAARIAFEQNELDTSADIKPSTTEAEHSFAKQDKEGSPEETKPVQMDSSRSPEKTNDQFIIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1549 355 SMART GATA_3 187 240 IPR000679 GO:0006355|GO:0043565
Gso7g1549 355 MobiDBLite consensus disorder prediction 250 289 - -
Gso7g1549 355 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Gso7g1549 355 Pfam CCT motif 124 165 IPR010402 GO:0005515
Gso7g1549 355 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 37 346 - -
Gso7g1549 355 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Gso7g1549 355 Gene3D - 186 245 IPR013088 GO:0006355|GO:0008270
Gso7g1549 355 ProSitePatterns GATA-type zinc finger domain. 193 220 IPR000679 GO:0006355|GO:0043565
Gso7g1549 355 MobiDBLite consensus disorder prediction 171 190 - -
Gso7g1549 355 ProSiteProfiles GATA-type zinc finger domain profile. 187 244 IPR000679 GO:0006355|GO:0043565
Gso7g1549 355 PANTHER GATA TRANSCRIPTION FACTOR 28 37 346 IPR045280 GO:0006355
Gso7g1549 355 MobiDBLite consensus disorder prediction 11 25 - -
Gso7g1549 355 Pfam GATA zinc finger 193 229 IPR000679 GO:0006355|GO:0043565
Gso7g1549 355 MobiDBLite consensus disorder prediction 1 27 - -
Gso7g1549 355 SMART tify_2 53 88 IPR010399 -
Gso7g1549 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 241 - -
Gso7g1549 355 Pfam tify domain 56 87 IPR010399 -
Gso7g1549 355 MobiDBLite consensus disorder prediction 258 275 - -
Gso7g1549 355 CDD ZnF_GATA 192 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1549 Gso-Chr7 37266836 37272823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1549 30 237 Tify Gene Family AT1G51600 52.294 8.49e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso7g1549 CCT 6.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1549 - - gmx:102669848 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1549 7 37266836 37272823 Gso8g0561 8 5192537 5197946 GST