Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1539 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGCAAGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGCATGCATCAAGTAATTGAAAGGCACGATCGCTATTCAGCAATCCATAGATTGGATCGCCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAACAACATTCTGCGCAAGAAAGTAGAAGATAAGACTCGTGAACTGAGGCAGATGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTGCAGAAACTAGAGGAACATCTTAAAAGAAGTTTGACCAATGTTTCAAAAGTAAAGGATGCAAAATTTATGCAAGAGATCAGCACCTTTAAGAGAAAGTGTTTGATTATGTTGCCCATACAGGGAGTGGAACTAATGGAGGAAAACCAAAGACTGAAACAGGTGCCGAGCCTTATCCATGCACATAGCTATAGGCAATCATCGGAATCCATTCTTAGCAATTCATCTAACCTTCCTGAAGATGGTGGTAGCAACACATCTCTCAAGTTGGGGTTACCTTAA 645 0.4186 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERHDRYSAIHRLDRPSIELQIESDSNNILRKKVEDKTRELRQMNGEDLQGLTLQELQKLEEHLKRSLTNVSKVKDAKFMQEISTFKRKCLIMLPIQGVELMEENQRLKQVPSLIHAHSYRQSSESILSNSSNLPEDGGSNTSLKLGLP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1539 214 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gso7g1539 214 Coils Coil 122 142 - -
Gso7g1539 214 PANTHER - 1 198 - -
Gso7g1539 214 Coils Coil 92 112 - -
Gso7g1539 214 MobiDBLite consensus disorder prediction 191 205 - -
Gso7g1539 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 ProSiteProfiles K-box domain profile. 85 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso7g1539 214 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Gso7g1539 214 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso7g1539 214 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Gso7g1539 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 MobiDBLite consensus disorder prediction 191 214 - -
Gso7g1539 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso7g1539 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1539 Gso-Chr7 37191367 37203328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1539 1 214 MADS-box Gene Family AT2G22540 50.633 3.66e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso7g1539 K-box 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1539 - - gmx:100812951 371.318