LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g1519	ATGGATCGTTCTGCTATGACTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGACAAGTATGAGCTGGTCCGTGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGCTCATGAGAGACAAGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGACAAGATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGATCATATTAACCCCTACACATTTGGCTATTGTGATGGAGTACGCTTCTGGGGGAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGACGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTGCCGGCCGATCTCATGGTTGAGAACACGATGAACAGGCAATTTGAGGAGCCTGATCAACCAATGCAGAGCATTGAAGAAATCATGCAGATAATCAGTGAGGCTACAATTCCTGCAGCCGGAACTCAGTCTCTCAACCAGTATCTTACTGGTAGCTTGGACATTGATGACGACGACATGGACGAGGACCTAGAGACCGATCCCGACCTCGACATTGATAGCAGTGGAGAAATAGTTTATGCAATATGA	1095	0.4447	MDRSAMTVGPGMDMPIMHDSDKYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGDKIDENVRREIINHRSLRHPNIVRFKEIILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISSECRHLISRIFVADPAQRISIPEIRNHEWFLKNLPADLMVENTMNRQFEEPDQPMQSIEEIMQIISEATIPAAGTQSLNQYLTGSLDIDDDDMDEDLETDPDLDIDSSGEIVYAI*	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso7g1519	364	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso7g1519	364	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso7g1519	364	PANTHER	SERINE/THREONINE-PROTEIN KINASE SRK2E	14	359	-	-
Gso7g1519	364	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso7g1519	364	SUPERFAMILY	Protein kinase-like (PK-like)	15	317	IPR011009	-
Gso7g1519	364	Gene3D	Transferase(Phosphotransferase) domain 1	99	287	-	-
Gso7g1519	364	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
Gso7g1519	364	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524
Gso7g1519	364	PANTHER	SERINE/THREONINE KINASE	14	359	-	-
Gso7g1519	364	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g1519	Gso-Chr7	36430438	36434582	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g1519	16	282	CBL-interacting serine-threonine protein kinases	AT4G24400	44.000	9.14e-70	223

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Gso7g1519		Pkinase	4.4e-72	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g1519	K14498		-	gmx:100786389	701.819

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