Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1478 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTTGGCTCCGAGGGTGAGAACTCAAGGAGCAAGGTGCAACAACATCAGCATCATGATTTTGCTCATGCTAACAAGGAACACCCTCAAGAGAAAAAACCAAGTTTTGACGAGTTTCAGTCAACACCCTCAAAGGTTTCCATTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGAGAACCCAAAATTGGGTTTTGTTGAGAGAGAGGTTGGTGATAGAAGCTCGGTGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCTGATCAGGATGAGAAATGCCTAACTGGGTTGGGTATGCCTATCTGGCGTGACGAATTAAGGTTAAAATCGTCGATGGTAGAGGTGTCCACATTTAGTGCGCAACAGTACCTTGAACAAGATTGTCTTCGAAGGAAGATATCCATCGGAAAGCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGACTAGGGAGGCTTCTTCAAATAGATCCATTGAGGAAGAGTGTGAGAGGGAGAAGAATGATGGCAGCAAGAAGCAGAAGCTTGAGACTCTTAGCCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCAAACGCTTTGCAAAATGGCGACCAACTCGTTAGGCCAAAGCCTTGTAAGCCATCCACAAGGACCACAACTACGATAAATTCGTGTTCAAATGATTACACAGCAGCTTCTGTGTCTCACTCTTACTCTCACCCTTTCTCACACAACCAAAGTTGCTCACTCACCCGAAATTCAACCGAGAATTTTGAGTATTCACACAGCAAAGATGATCAAATTTGGCATTGTGGAGAGGGGACTAATGGCTCGGTTCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGGCCAATTATTCCTTCATGCAAGGGAATAGTCAGTATAAGGCTACTAGTTCAGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGGTCAGTCAGAATGCTCAAGAGGAAACAATTCTGGGGATTTAAGAGGCTTGGAAGGTGTGAATGGTGGGAAAATGCAGTTTTCTACATCAGAGAGAGTTCTAAGAGACATTGTGTCTGAGTCTATCCCAGCCATGGCATTGACATTTCAGGAGTTCACTGAAGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGAAATGCCAGAGAAGAAAGGGGAATTAGAGAGCCTCCAGAACCAGCTAGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCAAACTCTCATAAGCAGCAGCTAGAGATTTTGGCTTCCATCAAGATGGGGCTTGGAAGTTTCTTGTCCGGTCAGTTCCAATTCATGGAGATGGTGGATGTTTTCTTGTACATGAGATGTAGAAATGTGAACTGCAAGAGCTTACTTCCTGTTGATGACTGTGACTGCAAGATCTGTTCAGGGAATAAGGGTTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAACACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCTCACTGGTGTCATGCTGCCTGTGCCATTCAGAGGAATCTAATCAAACCTGGTCCTAGTTTGAAGGGTCCTTCTGGAACCTCTGAGGTGCAGTTTCATTGCATTGGCTGTGGACATGCTTCAGAAATGTATGGCTTTGTCAAAGATGTCTTTGTGTGTTGTGGCAAGGATTGGGGGCTAGAAACCTTGGCAAAAGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACGGAAAATATGCTGTTAAAGCTTCATGCTAAACTGGTTTCTCCTTTGGATGCCTGCAACCACATCATACAGTTTTTCAACTATACGGATGGCATGTCTGAATTTCCTCCTTCTGTATCCTCAAAGGATTTGTCTACATCTAAGGCTAACCTAACAATGGACACAACATCGTCTCTTCCACAATCTACTTCTCTAATGCCAATATACACTTTTGACATGAGCTACACTAGGTCAAATGATGTTCAACAAAAAGACCTCAAATCCTCCCTCTTAAGTGAACAAAAAAAAGAGACTGATTTCCACTTGGAGCCTCTATTAGGGAAAGGAGAAGGGCTCGAAAGCTTGGAGAGCATAGTGAGGATAAAAGAGGTCGAAGCCAGAATGTTCCAAAACAAGGCAGATGAGGCAAGGAGAGAGGCAGAGGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAAGAGTATGCAGAAAGGATTGGCAAGATTTGCTTGCATGAGGCAGAGGAAAAGTGGAAGAAGAAATTTGATGAACTCAATGTCTTGCAAAATTCCCACTATGATTACTTCAACATGAAAAACAGAATGCAAGATGAGATCCATGGATTGTTGAAGAGAATAGAAGCAACAAAGCAGCAACGGGTTTAA 2508 0.4342 MIGGKDLVPNGVGSEGENSRSKVQQHQHHDFAHANKEHPQEKKPSFDEFQSTPSKVSISGLQELTLSYLCENPKLGFVEREVGDRSSVKGKEVVVYGNSDQDEKCLTGLGMPIWRDELRLKSSMVEVSTFSAQQYLEQDCLRRKISIGKQKQDQDEKWVERDFLSLSETREASSNRSIEEECEREKNDGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVRPKPCKPSTRTTTTINSCSNDYTAASVSHSYSHPFSHNQSCSLTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANYSFMQGNSQYKATSSDNQSFFPSELPARVRFEGQSECSRGNNSGDLRGLEGVNGGKMQFSTSERVLRDIVSESIPAMALTFQEFTEEVITSIKEHLKGLIEMPEKKGELESLQNQLGRRSDLTRETLSNSHKQQLEILASIKMGLGSFLSGQFQFMEMVDVFLYMRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHASEMYGFVKDVFVCCGKDWGLETLAKELDCVRRIFQGSEDRKGKELHIKTENMLLKLHAKLVSPLDACNHIIQFFNYTDGMSEFPPSVSSKDLSTSKANLTMDTTSSLPQSTSLMPIYTFDMSYTRSNDVQQKDLKSSLLSEQKKETDFHLEPLLGKGEGLESLESIVRIKEVEARMFQNKADEARREAEGFQKMIKTKAAQMEEEYAERIGKICLHEAEEKWKKKFDELNVLQNSHYDYFNMKNRMQDEIHGLLKRIEATKQQRV* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1478 835 Coils Coil 813 833 - -
Gso7g1478 835 Pfam Coiled-coil region of Oberon 696 824 IPR032535 -
Gso7g1478 835 MobiDBLite consensus disorder prediction 21 45 - -
Gso7g1478 835 MobiDBLite consensus disorder prediction 1 52 - -
Gso7g1478 835 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 834 IPR004082 -
Gso7g1478 835 Coils Coil 737 764 - -
Gso7g1478 835 MobiDBLite consensus disorder prediction 170 190 - -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 413 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 430 445 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 469 490 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 515 535 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 588 607 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 731 751 IPR004082 -
Gso7g1478 835 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 770 792 IPR004082 -
Gso7g1478 835 CDD PHD_OBE1_like 508 567 - -
Gso7g1478 835 PANTHER PROTEIN OBERON 3 1 834 - -
Gso7g1478 835 Pfam PHD - plant homeodomain finger protein 478 602 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1478 Gso-Chr7 33388806 33392473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1478 478 575 PHD Gene Family AT5G57380 27.551 3.71e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1478 - - gmx:100820248 1685.62