Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1477 ATGATGACTCCAAACTTGAATCTGGAACCAGAAGGTGGTTTAAAAGTCCTCAGCCAAGTAGGTTTCGATAAATCAATACAAGAGACATCTCATGATCTTACCAAGGACAGCACTGCTACTTCCTCCTGTCTTACCAAGGCTGATCCTGACCCAGGTTCTGTTTCCCTTGACTTGTCCCTCAACTTCAATCCCAATGATGAAGAGTTGAAAGGCACAAGTGATACTAACTGTGAAGTAGGACCTGAAACACATGCCTCAGCATCAGCAATTCCTAGAGTTTTCTCTTGTAATTATTGTCAGCGGAAATTCTTTAGCTCGCAGGCATTAGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCGAAGCGTGCAATGCGAATGGGGATGTTCGCTGAAAGGTACACAAGCCTAGCATCTCTGCCTCTCCATGGTTCTGCTTTTCGGTCGCTTGGACTCGAAGCTCATGCTGCAATGCACCAAGGGCATGTGCATCATTCAATGAGGGCTCCTGATATGAGTGCTGCAGCGAAATTCGGGAAAGACTATTTTCGGACACCGATCTTCGTGGAAGATGATGATGTTGGTCTGTTTTGGCCTGGAAGTTTCAGACAGATTGATGAAAGGGGTTATGTTAATTTGAGGCATGGTGAGCATGCTCATAATTCAAATACTAGTTTTGTAGTAGCAACTGCACCTCAAGCACAAACATCTGTGTCTCCTGATCTCACTCTGAGGCTTTGA 747 0.4538 MMTPNLNLEPEGGLKVLSQVGFDKSIQETSHDLTKDSTATSSCLTKADPDPGSVSLDLSLNFNPNDEELKGTSDTNCEVGPETHASASAIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFAERYTSLASLPLHGSAFRSLGLEAHAAMHQGHVHHSMRAPDMSAAAKFGKDYFRTPIFVEDDDVGLFWPGSFRQIDERGYVNLRHGEHAHNSNTSFVVATAPQAQTSVSPDLTLRL* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1477 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Gso7g1477 248 MobiDBLite consensus disorder prediction 28 50 - -
Gso7g1477 248 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gso7g1477 248 PANTHER ZINC FINGER PROTEIN 3-RELATED 11 248 - -
Gso7g1477 248 Gene3D Classic Zinc Finger 81 140 - -
Gso7g1477 248 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Gso7g1477 248 PANTHER ZINC FINGER PROTEIN JAGGED 11 248 IPR045320 GO:0003700
Gso7g1477 248 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1477 Gso-Chr7 33374639 33380165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1477 49 248 C2H2 Transcription Factor Family AT1G24625 44.550 3.25e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g1477 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1477 - - gmx:100777133 507.294