Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1456 ATGGATCAGCGAAAGCTACGAGACTCGTCCAATTCGAAACCCGCTTCAGATGCAGCACCCCAACACGTCACTCTCACCTCTAACCGCTTCCGCAACTCTCAAGCTGCTGTGAGGGAGAGAGAGAAAGAGAAGGGTGAAGGGGAAAACGAGGATCCAAGTGCGGCACGAAAGGTTCTAAAGGCAGACCGCGAGAAGCTCAGAAGGGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACGCGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACTATCCTCACTGAGACCGTCCAAATGCTAAAGGACTTAACCGCTGAAGTTAATAGGCTTAAAACAGAGCATAAAACACTTTCTGAAGAGTCACGCGAACTAATGCAAGAAAAGAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTTAATGTGCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGAGTGCAATTGACCCTTCGGCTGTCATTAGTCAACCTTACTCATATCCAGTTCCCATACATATCCCTTCTGCTCCAATCTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGCCACATTCCTAATCCTTGTTCAATGTATGTCCCATATACTACTCCAACTAGCCACCCCCCAGTTGAGCCGCCATCAATGATGTATGCTTCCACGTCCCACGCATCGAACCAAAAAGAATCCGGTAGCAAGTCACCAGGTCATAGAAGGTCCAGTGGCGCTGAAAGAAGTAGCGAGACTGACGATGTGGTCACAGAGCTTGAACTTAAGATGCCTGGATCATCATCAACACAACAGGGTTGCACTTCTGGAGGAAGGAAGGGCAAGATGAAGGATAGAACCATCATAGGTGGGAGTGCTTCAAGCCAGTATTCTTCATCTCTAGGACTTCAAGATAGCTCCAACAGCGTGGGTGACATCCCGAAGACTGATAATTGA 990 0.4667 MDQRKLRDSSNSKPASDAAPQHVTLTSNRFRNSQAAVREREKEKGEGENEDPSAARKVLKADREKLRRDRLNEHFQELGNALDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKTLSEESRELMQEKNELREEKTSLKSDIENLNVQYQQRVRIMFPWSAIDPSAVISQPYSYPVPIHIPSAPISIHPSLQPFPFFGNQNPGHIPNPCSMYVPYTTPTSHPPVEPPSMMYASTSHASNQKESGSKSPGHRRSSGAERSSETDDVVTELELKMPGSSSTQQGCTSGGRKGKMKDRTIIGGSASSQYSSSLGLQDSSNSVGDIPKTDN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1456 329 Pfam Helix-loop-helix DNA-binding domain 56 105 IPR011598 GO:0046983
Gso7g1456 329 MobiDBLite consensus disorder prediction 274 288 - -
Gso7g1456 329 MobiDBLite consensus disorder prediction 12 33 - -
Gso7g1456 329 MobiDBLite consensus disorder prediction 1 62 - -
Gso7g1456 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 105 IPR011598 GO:0046983
Gso7g1456 329 MobiDBLite consensus disorder prediction 225 329 - -
Gso7g1456 329 PANTHER TRANSCRIPTION FACTOR BHLH121 34 328 IPR044579 GO:0003700|GO:0055072
Gso7g1456 329 CDD bHLH_AtILR3_like 60 134 - -
Gso7g1456 329 SMART finulus 61 111 IPR011598 GO:0046983
Gso7g1456 329 PANTHER TRANSCRIPTION FACTOR BHLH11 34 328 - -
Gso7g1456 329 MobiDBLite consensus disorder prediction 34 62 - -
Gso7g1456 329 MobiDBLite consensus disorder prediction 300 329 - -
Gso7g1456 329 Coils Coil 95 150 - -
Gso7g1456 329 MobiDBLite consensus disorder prediction 247 270 - -
Gso7g1456 329 Gene3D - 54 129 IPR036638 GO:0046983
Gso7g1456 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1456 Gso-Chr7 31811173 31814956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1456 54 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 53.017 1.05e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1456 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1456 - - gmx:100818281 617.076