Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1421 ATGACGACTGAGGCTGCAGAGGAAATCGCTAAGAAGATCGATATTGTAATTGCTTCCATCGGCTATAATGAGGTTGACCAACTACCTCAAGCAAATATTGGTTTTCCTTGTGTTTCAACAAAATTAAGGTCTAAAAGGGGTTCAAGGGATCCTGAAAGTCCATCCAAGCATGAAACTAAATCTTCAGTGCTAAAGAATAATGCATGTAGCACTAATGATAATCAAAATTTGAACAATGTGGTTGTGGATGACAGCGACAACACTGGAGCAAGAGATAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTCAGAAGAGCTTTGAGTTGGGAAACAACCTTGAACCTGAGAGGAAAATGCTGCTTGCAAGGGCTCTTCGATTGCAACCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGACTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATAAAGGCAGATAATGATGCACTTCAATTTCAGAACCAAAAACTTTAG 537 0.4004 MTTEAAEEIAKKIDIVIASIGYNEVDQLPQANIGFPCVSTKLRSKRGSRDPESPSKHETKSSVLKNNACSTNDNQNLNNVVVDDSDNTGARDKKRRLNMEQVKTLQKSFELGNNLEPERKMLLARALRLQPRQIAIWFQNRRTRWKTKQLEKDYDLLKRQYEAIKADNDALQFQNQKL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1421 178 Pfam Homeobox associated leucine zipper 148 178 IPR003106 GO:0006355|GO:0043565
Gso7g1421 178 CDD homeodomain 91 149 IPR001356 GO:0003677
Gso7g1421 178 PANTHER HOMEOBOX LEUCINE ZIPPER ATHB-LIKE PROTEIN 71 178 - -
Gso7g1421 178 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gso7g1421 178 SMART HOX_1 91 152 IPR001356 GO:0003677
Gso7g1421 178 MobiDBLite consensus disorder prediction 43 59 - -
Gso7g1421 178 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 178 IPR045224 GO:0003700
Gso7g1421 178 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Gso7g1421 178 Coils Coil 147 174 - -
Gso7g1421 178 Gene3D - 73 153 - -
Gso7g1421 178 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Gso7g1421 178 SUPERFAMILY Homeodomain-like 78 150 IPR009057 -
Gso7g1421 178 MobiDBLite consensus disorder prediction 60 78 - -
Gso7g1421 178 MobiDBLite consensus disorder prediction 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1421 Gso-Chr7 29041048 29045068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1421 71 178 Homeobox Transcription Factor Family AT1G69780 71.296 1.41e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso7g1421 Homeodomain 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1421 K09338 - gmx:100779430 333.569