Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1411 ATGTTGGCCTCCACCATCCTAACGCCCACGAAGCTCAACACTTCGCATTTCGTCCCACCCATCACCGTCGTCGTCGCAGAAACTCACCCGAGAAACAGAGTCGCACTCTTTCCCAAATCCAACTCCAAACTCGCTTTCGTTGCAAGGGCCAATGGTAATGCCCGTGACGGCGCCGTCGACGCCACCTCTCCCCTGGGCATTGATGCTGTAACGAGTACATCTTCTGGCCTCAGTGATGGTTATGTGGCTTTGTTCGTTCGTATGTTAGGCATTGATCGTGATCCTCTGGATAGAGAACAAGCTATAGTTGCTCTCTGGAAATATTCGCTTGGTGGAAAGAAGTGTATAGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTACGATCAGAGTCTAATTCAGCATGTGAGGCAGCTGCGGGTCTTCTGCGATCACTATCTTCAGTCAATCTATATAGAAATTCTGTAGCTGATAGTGGAGCAATAGAAGAGTTAAACAGATTGCTGAGGCAATCTTCCTTGGCATCTGAGGTAAAGGAGCAGAGTTTGAGTACACTGTGGAATTTATCTGTTGATGAGAAGCTCTGCATTAAAATTTCAAAGACTGAGATTCTGCCATTAGCTATTAGGTACCTTGACGATGAGGATATAAAAGTAAAGGAGGCTTCAGGGGGCATTTTGGCAAATTTAGCATCGAGCCGTGTTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTGACATCTAATTTGGAAGGATCTAACGTTCTTAGGAAGGTCACAAGGAATGCATTGCTGGAACTTGTTAAGGACAAGTATTATAGCATTCTTGTTATTGAGGAAGGTCTGGTCCCTGTGCCATTAATTGATGCTGCAGCCTTTAAGTCATTCACCCCAGGCATACATTTGTGGCCCATGTTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACAGCCATCCAGATATGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACTTAGAGGAAGCAAAAGTCAATGCAATTGTTGGACGAACACAACAGCAATTCCTTGCTCGTGTTGGGGCTTTAGAAATGGAACAAAAGACTATGCCTCATTCTGAATGCTCAAATGATCAGAGGTTTACACTTTTACCTTGGATGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTTGAAGATAGGTTTGCAATAATTAAGGCTGCAGAGTCAATTGCTACTGCATGTATCAATGAACATATGCGTATAGCATTCAGGGAAGCTGGAGCAATAAAGCATTTAGTAAGGCTTTTAAATTGTGATGATAATTCAGTCCAGTTGGCAGCCACACAAGCCTTGGAAAGGCTGTCCGTTAGCAATATTGTTTGCCGGGTTATTGAAGCTGAGGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCAGAGATAGCTGGAACTATTTTGGAAAAGTCTTTGAACATACTTGCTCGGATATTAGACCCCAGTAAAGTGATGCAATTAAAGTTTTATGATGGACCAGTTAATGGATCTGAAAAGGCATTTGGTGGAACAAAAGGTGACTGTGTTTCAACCGGGTTTAGTAGCACTGAACAAGCTGTATCAAAAACGTACACAAGGAATGATATACTGGATTCTGTTTTCATTGCACACCTGGTTGAGATTATGAAGTCCTCTCCTCCCAGTTTACAAGAAAAAGCTGCTACTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCCCCAATTATATTTCTGGATATTGAATCTGGTCTGAATTCAGCTTTTCAGCAAAAAATTTTGAAAATTTCAGCGGACATGGAATCTGACGTAGAAGATCAGTTTTCTGAAGCATATGCAATTGAATTTGAAGAAGCTGGTCTTGCAATAGCTGCAGCATCCCGGTTATTAACAAGACTACTCGATCATGAGCAGTTCCGCCACAAAATAAACTCCTCGCAATTCATTGATTTGCTTCGGGGAATCCTCAGGTCCTGCATTCCCCTCCACAATAAAAAGTGGGTAGCTACTTGCCTAGTTAAACTAAGTTCTCTCTCTGGCTCCATCACGAGCCTCTATCCAATCAATGTGGAAGTTACTCTCTACGAGACAATCCCAAGACTTCTGGAACAGATCAAAACATCATTCTCCCCAGAAGCACAGGAAACAGCTGTTGTTGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTACACAGAAGCTATTATTTCTGATGAAGCAATATATTCATTGGTGAATTTGATAGAAGAAGGCAGTGATAGGGCTGTGGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTTGTGGCTGCTGGAGCAGTGCAGGTCTTAAAAAGAAGTGTTCTAGCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTCAGGATTTTGCAACCGTGA 2511 0.4225 MLASTILTPTKLNTSHFVPPITVVVAETHPRNRVALFPKSNSKLAFVARANGNARDGAVDATSPLGIDAVTSTSSGLSDGYVALFVRMLGIDRDPLDREQAIVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESNSACEAAAGLLRSLSSVNLYRNSVADSGAIEELNRLLRQSSLASEVKEQSLSTLWNLSVDEKLCIKISKTEILPLAIRYLDDEDIKVKEASGGILANLASSRVNHNIMVEAGVIPKLAKFLTSNLEGSNVLRKVTRNALLELVKDKYYSILVIEEGLVPVPLIDAAAFKSFTPGIHLWPMLPDGTEIERTSRQPSRYGASELLLGLNIDDKNANLEEAKVNAIVGRTQQQFLARVGALEMEQKTMPHSECSNDQRFTLLPWMDGVARLVLILELEDRFAIIKAAESIATACINEHMRIAFREAGAIKHLVRLLNCDDNSVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKCSEIAGTILEKSLNILARILDPSKVMQLKFYDGPVNGSEKAFGGTKGDCVSTGFSSTEQAVSKTYTRNDILDSVFIAHLVEIMKSSPPSLQEKAATVLEFVALTDPTLAPIIFLDIESGLNSAFQQKILKISADMESDVEDQFSEAYAIEFEEAGLAIAAASRLLTRLLDHEQFRHKINSSQFIDLLRGILRSCIPLHNKKWVATCLVKLSSLSGSITSLYPINVEVTLYETIPRLLEQIKTSFSPEAQETAVVELNRIISEGVVDYTEAIISDEAIYSLVNLIEEGSDRAVEASLAILYNLSMDSENHSALVAAGAVQVLKRSVLANRPHWERALLLLRILQP* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1411 836 Pfam Armadillo/beta-catenin-like repeat 430 469 IPR000225 GO:0005515
Gso7g1411 836 Gene3D - 628 834 IPR011989 -
Gso7g1411 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 198 IPR000225 GO:0005515
Gso7g1411 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 472 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 197 237 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 430 470 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 154 196 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 238 281 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 112 153 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 555 595 IPR000225 GO:0005515
Gso7g1411 836 SMART arm_5 756 796 IPR000225 GO:0005515
Gso7g1411 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 124 166 IPR000225 GO:0005515
Gso7g1411 836 Gene3D - 387 611 IPR011989 -
Gso7g1411 836 Gene3D - 77 307 IPR011989 -
Gso7g1411 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 767 809 IPR000225 GO:0005515
Gso7g1411 836 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 835 - -
Gso7g1411 836 SUPERFAMILY ARM repeat 78 814 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1411 Gso-Chr7 28188930 28196096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1411 124 251 U-box Gene Family AT2G23140 33.594 1.80e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1411 - - gmx:100810447 1599.72