Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1409 ATGAGAGAGGGAGAGACAGAGCGAGACAGTGAGAGAGACAGCGGGTGGGAAAGAGTGAGGTCGAGAAGGGAGAGAAGAGAGAATGAGAGGACGAGAGGTATGAAGGGTCCGTGTCTGTCTATCGTCAGGGAAAGGAAAGGAGGTCAACAACGCCGCATGCGAGTCAACTGGAGAGATCATCGGAATATATCATCGTTTTACTTCACACGTTTTCCTGAAGACGCAACAGAGGATGAGCTATGGAAGATATTCAGAAGAGCGGGTGATGTCAGGGAGGTGTTTATCTCCAACAAGAGGAATAGGAACGGAAGAAGGTATGGATTTGTGAGATTCATTGGAGTGGATAACGTCCAACAGTTGGAAAGGAGATTGGATAACATAGTTCTGGGGGGATTAAAGTTATATGTTAACATCCCTAAATATGAAAGAGGTAGGGGTCGAGTGCAACCACAATCAACAGGGGGACGAGACCATACCAGACATGTCGAACAGGGGCGCAGAGAAACTTACCAGGCACAGAAGCACACAGCGATGCCGGGCCAGATACGCGGATCCTTTGCAGATGTGGTAGCTAGGAGAGAACCACGTATACAGCAAAGGAGGACATCAATAGTTCAGAATGCTAAAACCAACACTTCGAGATCAAAAGTACATCTTGACAGTCCTATGACAGCACCGAAGTGGCTACAGGATGCATGGGTGGGAATGCTAAAAAATCTTGCACTCCTTGACAGAGTAGAGGAGAATATGCTCTGGGACTGGGGATTAGACGTAGTGCCGAAATACATCGGCGACAACATGGTACTTCTCCCCAGCCTTACCGAAGACAAGGCAAAACAAATGGTGGAGGATGGGACTGCAGGAAGGGAGGTGATGTTTTATTTGGTGGAAAGGTGGAACAGGAAGATGCGTGCTGGTTCTAGACTTACATGGGTGCAATGTTGGGGAGTGCCGTTGGTAGCATGGGACTCAACACACATAAGGGAGATCGTGACGGCCATAGGCGAGGTAGTGGAAGTAGACGAGGAGATGGAGGATTTGAGGAAGATGGACAGGGCAAGGCTCCTTGTAAGAACACCGTGGAAACCACTGATTCAGCACACGGTGAGCGTCCATATTGAAACGGAGGTGTTCCAGGTACACATAATAGAGGAAAGTGGAAGCAGTCCCAATTGGTGCCATGCCGGCGGAGCGCGATGCTTAGTTCATTGGAGGACATTTGCTCGGAGGAAAGCGAGATGGGTTCGTTATCGGAACTGA 1260 0.4913 MREGETERDSERDSGWERVRSRRERRENERTRGMKGPCLSIVRERKGGQQRRMRVNWRDHRNISSFYFTRFPEDATEDELWKIFRRAGDVREVFISNKRNRNGRRYGFVRFIGVDNVQQLERRLDNIVLGGLKLYVNIPKYERGRGRVQPQSTGGRDHTRHVEQGRRETYQAQKHTAMPGQIRGSFADVVARREPRIQQRRTSIVQNAKTNTSRSKVHLDSPMTAPKWLQDAWVGMLKNLALLDRVEENMLWDWGLDVVPKYIGDNMVLLPSLTEDKAKQMVEDGTAGREVMFYLVERWNRKMRAGSRLTWVQCWGVPLVAWDSTHIREIVTAIGEVVEVDEEMEDLRKMDRARLLVRTPWKPLIQHTVSVHIETEVFQVHIIEESGSSPNWCHAGGARCLVHWRTFARRKARWVRYRN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1409 419 CDD RRM_SF 67 137 - -
Gso7g1409 419 PANTHER RNA RECOGNITION MOTIF 61 394 - -
Gso7g1409 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 134 IPR000504 GO:0003723
Gso7g1409 419 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 61 394 - -
Gso7g1409 419 SMART rrm1_1 65 137 IPR000504 GO:0003723
Gso7g1409 419 SUPERFAMILY RNA-binding domain, RBD 65 160 IPR035979 GO:0003676
Gso7g1409 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Gso7g1409 419 MobiDBLite consensus disorder prediction 1 33 - -
Gso7g1409 419 Pfam Domain of unknown function (DUF4283) 248 357 IPR025558 -
Gso7g1409 419 Gene3D - 44 150 IPR012677 -
Gso7g1409 419 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1409 Gso-Chr7 27933492 27934751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1409 50 136 Eukaryotic Initiation Factors Gene Family AT1G71770 28.736 6.00e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1409 - - gmx:121175196 844.343