Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1385 ATGCCTCGCCCTTGTTTCGACAAGCTTGTTCTCCCCACCACTCTTCAATCCAGACAACTGAGGATTCCGGATAATTTTCTGAGAAAATATGGGACCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCCCATAGGATTGAAGAAAGCAGACAACAGAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAACGCTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTTAATTTGAGTACGTCTGAGGTAAACTATCAATCGGCCATGAGAAACCATAATGAAGGGTCTTGCTTTGCCAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCCTTGGTTTGTCGGATTTGTCACCTCAGTACCTTACTCCCGGTGCATTGCAAAGCAAGGGTTTTGCTGGATCTGTGGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGTGGATCAAAACTCAATCGCGTAAACTGGGGTGATGGTGGGAGTGCTTTTTCTTTGAAGGATGCGAATTCACAAGGCAATCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGAAGAATTGAAATTGCGTTATTCTAATTCTAACGAGGAAGCAGTTAATAAAACCGCAAAAAAGAAGCGGAAATCAGAACCCTATGGCGAGGAACCTTCTGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAACGAACCGTGACGGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAACATTTGAACCGACTAATCCTTTCTGCCGAGTTGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATCTGCCTTCCACCTTTGCTGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGCTGTCCAATGGTAGACAGTGGTCCGTTCGCTGCCTCTATAGGGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACAGTGGAGAACAATTTAGGAGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAGAATGAAGGAAGTTGTGCTGCAAGTTACGGTGTTTCGCGTAACCGAGGATGCAGGGTTGTTGAACCAGCTTCCTATGCAACAGCAGCAGCAGAGCCCAAACATCAGCCACACTAAACTCTTGAACCCTCACTTGCAGCATCGCATCAGTACAACCAAATTGATTAGAAATTAG 1314 0.4323 MPRPCFDKLVLPTTLQSRQLRIPDNFLRKYGTQLSTIATLTVPDGSVWPIGLKKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNHNEGSCFANYHHIFDEMEDVDSLGLSDLSPQYLTPGALQSKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAFSLKDANSQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNSNEEAVNKTAKKKRKSEPYGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKTFEPTNPFCRVVLRPSYLYRGCIMYLPSTFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAGLLNQLPMQQQQQSPNISHTKLLNPHLQHRISTTKLIRN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1385 437 SUPERFAMILY DNA-binding pseudobarrel domain 293 394 IPR015300 -
Gso7g1385 437 Pfam B3 DNA binding domain 303 393 IPR003340 GO:0003677
Gso7g1385 437 Pfam B3 DNA binding domain 10 96 IPR003340 GO:0003677
Gso7g1385 437 PANTHER B3 DOMAIN-CONTAINING 1 427 - -
Gso7g1385 437 Gene3D - 1 99 IPR015300 -
Gso7g1385 437 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Gso7g1385 437 CDD B3_DNA 298 393 IPR003340 GO:0003677
Gso7g1385 437 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 427 - -
Gso7g1385 437 Gene3D - 277 397 IPR015300 -
Gso7g1385 437 SMART B3_2 6 98 IPR003340 GO:0003677
Gso7g1385 437 SMART B3_2 300 395 IPR003340 GO:0003677
Gso7g1385 437 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Gso7g1385 437 MobiDBLite consensus disorder prediction 236 252 - -
Gso7g1385 437 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Gso7g1385 437 MobiDBLite consensus disorder prediction 228 261 - -
Gso7g1385 437 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1385 Gso-Chr7 21919262 21924754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1385 1 399 B3 DNA Binding Superfamily AT3G18990 48.537 3.14e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso7g1385 B3 9.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1385 - - gmx:100806715 862.062