Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1354 ATGGAAAAGGTGGCTCCGCCTCCGATTCTGATGCACCGGAAGCGCGATCTATCGTACGACATCGTTTCGGCGGGTCCGAACGAGAGCTGGAGGTGGGAGTGGGACAGCGTGCGTTTCGCAGGAAAACCACCGCCGCCGCCACCACTGTCCCCAAACAACGACGTCGTTTTCGAGGCGGAAAGTGTCGTTCCTCCTCTACAGTTAAAGCTCGGAGGAACAACAAGAGTGAATAACAATAACATCAATATCAACGTTAGCAACAAGAGAGTTAGGTCGGGGTCCCCCGGAACGGCGTCGTATCCGATGTGCCAGGTGGACAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAGGTGTGCGAGGCTCATAGCAAAGCCTCGAAAGCGCTTCTCGCGAATCAAATGCAAAGATTCTGCCAGCAGTGTAGTAGGTTTCACCCGCTCTCGGAGTTCGATGAGGGGAAGCGGAGCTGCCGCCGGAGACTCGCCGGACACAACCGGCGCCGGCGGAAGACGCAGCCGGAGGATGTTACCTCGGCGACTCCCGCGCCTGCTGCCGCCGCGAATTTGGAAATCTTCAACTTGTTGACTGCTATAGCTGGAGCTTCGCAGGATCTTGCAACCAAGTTGCTGGATGCTGGGAGTGGTAATGTTAATGGGAAAAAGGATCATGTGCAATTGCAGACACCATCATCCTCCTATCAATGTCACGAGTCTCATGACCTACTGAACCACACCCCGGCTGCCCCGTTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTTTCTGGGGGTTCTGCCCCTGATTCCAGTGCGTCACCCTCTCAAAACCGCAGCTGCAGCAGTGATGGTGGCAGTGCTGACCAGACGAGACAACAGCAATTCTTTTCGGTTGGTGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGATTGTCAAGAAGTTCGAGTTAATTTACCACTGCAACTCTTTAGCTCCTCTCCGGAAGATGACAGCCTGCCTAAACTAGCATCTTCTAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCTGAAGAGAGATCGCCATCGTCTTCTCCTCCTATTGTGGAGATGCAGTTTGATTTGCAGGATGGGGCTAGAGGTCTCAAGCCAGAGAGTATATCCTCTGGAAGAGGAGTTAATGCAAATAAGGAAGCCAGCCAAAGTCATAGTTCTAATATCTCTCTTGATCTATTTAAAGGGTCAAATAACTGGATCCAACAACCTAGTTCACTTCAGAGTGTTCCATTCCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTCCCAGGAACACTGCGAGCACAGATTTACAATTGGCTATCCAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGACTGGGAGAGATTAGAAGAAAACTTCCTTCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGATTTTTGGAGAAATGGAAGGTTTCTGGTTCATTCTGGCAGTCGGTTAGTTTCACACAAAGATGGGAAGATTCGCATATGCAAACCATGGAGAACATGGAAGTCTCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACTTGTCAACTCTTGGCACAAAGATTCACTGTACAGGTACTGGCTCTTATGCATCAGCAGAAGTCATAGGTTCTGCACATTCTGGTGTGATGTATGATAAGATAAAGTTGAGTGGTTTTAAAGTTCAGGATGTATCGCCTGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGATGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCACTTCTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCTTATGTGCATGAGGTTCCATGTTATTCACTTGACAGGTTCAAATTTGTACTCATATTTGCTGTGGAAAGAAACTGTTGCATGCTAATCAAAACCCTTCTGGATGTGCTGGTTGGTAAACACTTGCAAGGGGAATGGTTGTCAACGGGGTCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAGGAAAATACGTAGGCATGGTTGATTTGCTCATCCACTATTCTATACCAAGCAAAAATGGTACATCCAGGAAATATGTATTTCCACCAAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCGGCATGCACATCTGGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGTTTGAAGTGCTGGGAATCCCTTGTGGATGCAAACGGACAAAGTCCACATGCCTATGCCATGATGAGGAATAATGACTCTTATAATGCGCTGGTCGCCCGTAAACTTGCTGACAGACAAAGGGGTGAAATTTCGGTAACAATTGCAAATGCAATAGAGCAACAGTCACTGAGAGTGGAGCTTAAGCAAAAGCAAAGTTACTTAGTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGAATGCAGAAATTCGCTACAACAGAAGAGTTCCAGGTTCACATGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGTCGCCCTTTCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 2979 0.4679 MEKVAPPPILMHRKRDLSYDIVSAGPNESWRWEWDSVRFAGKPPPPPPLSPNNDVVFEAESVVPPLQLKLGGTTRVNNNNININVSNKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAANLEIFNLLTAIAGASQDLATKLLDAGSGNVNGKKDHVQLQTPSSSYQCHESHDLLNHTPAAPLTMDLLAVLSTTLSGGSAPDSSASPSQNRSCSSDGGSADQTRQQQFFSVGGERSSSSSQSPVEDSDCQEVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPPIVEMQFDLQDGARGLKPESISSGRGVNANKEASQSHSSNISLDLFKGSNNWIQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSADWERLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSRLVSHKDGKIRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTLGTKIHCTGTGSYASAEVIGSAHSGVMYDKIKLSGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPCYSLDRFKFVLIFAVERNCCMLIKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSKNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQSPHAYAMMRNNDSYNALVARKLADRQRGEISVTIANAIEQQSLRVELKQKQSYLVKRGQSSCAKCANAEIRYNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTM* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1354 992 MobiDBLite consensus disorder prediction 167 187 - -
Gso7g1354 992 Gene3D - 93 164 IPR036893 GO:0003677|GO:0005634
Gso7g1354 992 SUPERFAMILY Ankyrin repeat 739 887 IPR036770 -
Gso7g1354 992 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677
Gso7g1354 992 MobiDBLite consensus disorder prediction 433 454 - -
Gso7g1354 992 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 30 992 - -
Gso7g1354 992 MobiDBLite consensus disorder prediction 329 374 - -
Gso7g1354 992 SUPERFAMILY SBT domain 101 181 IPR036893 GO:0003677|GO:0005634
Gso7g1354 992 MobiDBLite consensus disorder prediction 268 405 - -
Gso7g1354 992 Gene3D - 734 932 IPR036770 -
Gso7g1354 992 Pfam SBP domain 103 176 IPR004333 GO:0003677
Gso7g1354 992 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 992 IPR044817 GO:0003677
Gso7g1354 992 MobiDBLite consensus disorder prediction 268 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1354 Gso-Chr7 20287207 20293553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1354 8 992 SBP-box Gene Family AT1G20980 51.003 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso7g1354 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1354 - - gmx:100819004 1917.12