Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1345 ATGGCAGCACCTTTTTCTGCAGCATCTCTTTTTGCAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCAGCATTCCTCAACACCATCATCATCAACCACTCCAGCTGCACCACCCCAGAAGAAAAGAAGAAACCAACCAGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTTTATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGAGCCCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCTTTGGCACAAGAAAGTGCCAGAGATCAGCCACCAAACCTGAGCAGTGCCATTAGCAACCAACTATATGGAAACAGCAACAACATATCCTTAGGCTTATCTCAAATGGGTCCACAAATCCCTTCAATCCATGACCAAAACCATCAATCTAGTGACCTATTGCATTTTGGTGGTGCACCAAGGACTGGTCAATTTGACCACATTCTCCCACCAAACATTGCCTCATCATCACCCTTTAGACCTTCCATGCAAACCCCACCATTCTTCATGCAAGAACCAAACCAAACCTACCATGACTCAAACAAGCCATTCCAAGGACTAATACAATTATCTGACCTAAACAACAACAATGCCCCTTCTGGCTCCAACTTTTTCAACCTTCCTTTTCTATCCAACCGTGCCAACAAGAACAACAACTATTCTGAGGAACAACAACAATTCAACACGGCTGAAGAGTCCAATTTCTTCTCAGAAAGCACCATGAACATTGGCACTGATCACCAAGCAAACTCCACCACCACTGCCCCTTCTCTCTTCAGCACTAATTCCCTTCAAAACACCAACATTTCTCACATGTCCGCAACAGCACTGCTTCAAAAAGCTGCTCAAATGGGTTCAACAAGTTCAAGCAACCACAACATCATCAACAACAACACCACCAATAACAACCCTAGTGCCTCCTCTATTCTTAGAAGCTTAGCATCAAAATCTGATCAGAGGCAACTCGGTGGTGGTGCTGGAAACTATGCAACAATCTTCAACAACAGTGTTCAGGAAATGATGGACATTTCAGGGTTTGAAGCATATGATCATCATGGTGGCATGAACAAAGAACAAAAACTCGGTGTTGGAGGCTCTGATAGGCTCACAAGGGACTTTCTAGGAGTTGCGCAGCAGCAACAACAACAACAACGAGAAGGGTTTAACTTGGTGAGTTCTTTGGAATCAGAGACAAATAATAATAATGCTGCGCCGTCAGGTCAATCTTTCGGAAGTGATGGCAACTTTCAGTGA 1602 0.4463 MAAPFSAASLFAIREEDQNQMKQQQHSSTPSSSTTPAAPPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARDQPPNLSSAISNQLYGNSNNISLGLSQMGPQIPSIHDQNHQSSDLLHFGGAPRTGQFDHILPPNIASSSPFRPSMQTPPFFMQEPNQTYHDSNKPFQGLIQLSDLNNNNAPSGSNFFNLPFLSNRANKNNNYSEEQQQFNTAEESNFFSESTMNIGTDHQANSTTTAPSLFSTNSLQNTNISHMSATALLQKAAQMGSTSSSNHNIINNNTTNNNPSASSILRSLASKSDQRQLGGGAGNYATIFNNSVQEMMDISGFEAYDHHGGMNKEQKLGVGGSDRLTRDFLGVAQQQQQQQREGFNLVSSLESETNNNNAAPSGQSFGSDGNFQ* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1345 533 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 501 - -
Gso7g1345 533 Gene3D Classic Zinc Finger 125 205 - -
Gso7g1345 533 MobiDBLite consensus disorder prediction 396 423 - -
Gso7g1345 533 Gene3D Classic Zinc Finger 54 119 - -
Gso7g1345 533 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gso7g1345 533 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gso7g1345 533 Coils Coil 329 349 - -
Gso7g1345 533 SMART c2h2final6 71 93 IPR013087 -
Gso7g1345 533 SMART c2h2final6 112 142 IPR013087 -
Gso7g1345 533 SMART c2h2final6 147 167 IPR013087 -
Gso7g1345 533 MobiDBLite consensus disorder prediction 1 54 - -
Gso7g1345 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gso7g1345 533 MobiDBLite consensus disorder prediction 510 533 - -
Gso7g1345 533 MobiDBLite consensus disorder prediction 16 41 - -
Gso7g1345 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1345 Gso-Chr7 19796556 19805490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1345 41 494 IDZ Gene Family AT2G02070 51.172 1.94e-126 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g1345 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1345 K25870 - gmx:100807789 1040.8