Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1343 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGTTTACACAACAACACCAATCCTCCACTACTGCAGCTTCCTCAACTACAACTACTACTCCAACCACGGTGCCTCAGAAGAAAAGAAGGAACCAACCCGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTTTATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGAGCCCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCAAGCGTGAATCATTTGGGAACTCATCATCTGTATGGCACAAACCACATGAGCCTAGGCCTTGGTGCTCAACTTCAGAACCACCAAATCTCAGCCACTAACAGCATATTGAGCCTTGGAAGCGAACCAAAGTTTGAGCACTTGATCTCACCAAATCTGCACCACTCATCATCATCATCATTTGGAGTGCAATCACCCCAGTCATCATCGTTCTTCATGACTGATCCAAACCATGCATTTCAAGACCTCCAATCTCAGAACCAAGGACACTTATTCTCAAACAAGCAACTTCATGGTCTCATGCAACTCCCTGATCTTCAAGGAAACACCAATAACAACTCCACTACTTCTGCTTCATCATTGTCTGCTTCAGCTAATAACACCAATCTCTTCAACCTAAGCTTCTTCCCTAACACCAACACCAGTGGCAGCATAATCAATGATCAATTCAGCAACATAAGTGGAGGTAACAATAACCAAGGAACAGCAACACTCTACAGCACTAATAGCCCCGTGAGTAATAACCATGTTGGTAACTCAAGCTTGTCTTCACTCTTTGGAAACTCATCAGTGCAACAAGATAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGAGTTCAACCACAACCACCAATAATGAGTTAGGCATGAGATCAAGCATAGAGAATGAGCACAGTAGCCATCTACGTGGTTTGTTGAACTCTCTTGCCAACGGAAACAACCTTGGCCAGTATCACAACGTGGTGGAGGAGCCTAAGAAGATGTCACAAAACAATCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGTGTTGGGGGAATGGTGAGGAATATGAACAATGGTGGAGGGTTTTCACAAAGAGAGCAACAACAACAACACTCCATGGGAATTACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAAGCAAACCAACACTATGGAACCTCAACACTCTAA 1632 0.4479 MASASSSTPFLGIRQENQSQFTQQHQSSTTAASSTTTTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSSVNHLGTHHLYGTNHMSLGLGAQLQNHQISATNSILSLGSEPKFEHLISPNLHHSSSSSFGVQSPQSSSFFMTDPNHAFQDLQSQNQGHLFSNKQLHGLMQLPDLQGNTNNNSTTSASSLSASANNTNLFNLSFFPNTNTSGSIINDQFSNISGGNNNQGTATLYSTNSPVSNNHVGNSSLSSLFGNSSVQQDNMSPHMSATALLQKAAQMSSTTTTNNELGMRSSIENEHSSHLRGLLNSLANGNNLGQYHNVVEEPKKMSQNNLGLCFGGSDKLTLDFLGVGGMVRNMNNGGGFSQREQQQQHSMGITMSPLDPKLESAQANQHYGTSTL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1343 543 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 452 - -
Gso7g1343 543 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 442 512 - -
Gso7g1343 543 SMART c2h2final6 116 146 IPR013087 -
Gso7g1343 543 SMART c2h2final6 151 171 IPR013087 -
Gso7g1343 543 SMART c2h2final6 75 97 IPR013087 -
Gso7g1343 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Gso7g1343 543 MobiDBLite consensus disorder prediction 1 58 - -
Gso7g1343 543 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Gso7g1343 543 MobiDBLite consensus disorder prediction 503 521 - -
Gso7g1343 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 442 512 - -
Gso7g1343 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 452 - -
Gso7g1343 543 MobiDBLite consensus disorder prediction 503 525 - -
Gso7g1343 543 MobiDBLite consensus disorder prediction 1 49 - -
Gso7g1343 543 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Gso7g1343 543 Gene3D Classic Zinc Finger 129 208 - -
Gso7g1343 543 Gene3D Classic Zinc Finger 58 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1343 Gso-Chr7 19676886 19681953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1343 10 507 IDZ Gene Family AT2G02070 46.986 1.56e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g1343 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1343 K25870 - gmx:100806198 983.786