Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1342 ATGAAGCCAGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCGGGTTCTGAAGCGACCTCGCACTTCGTCTCCTCCTTCTCCGCCACCCGTCGAATCCTTCGCTTACACCTCCACCTCCAAGGTCGACGTTTCAAGCGAAAACGACGATGACAGCGATTGCGTCGAAATCGCGCCGGAAGCCGCCAATTTCCGCCAGAATCTCGATGACCTCGAGGACGCTGATGTGGACGACGAACCGGTACCGGCGTCCCGCGGCCGGAGGTTCATAATCGACGAGGAGGAGGAGGAAGACGGCGAGGAGGAGAACGGGGGAAGGGACGGACACGTGGCGGAATTGTATGATGTTGAGTCGAGCGAGGAGGAGGTGGTGGAAGAGGAAGTTGAGGAATTGAATGAGAACGACGTTGTTGGAAGGGCTTTGCACAAGTGCGCGCGAATCTCCGCGGAGTTGAAGGGCGAACTCTTCGGTTCCTCCGGGACCGCGTGCGAGAGGTATTCCGAGGTGGAATCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTTGATGTTGCGCGCGGGTCGGAGGAGGATTCAGGTTTTAAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGCGTCAATTTTTTGCTCCTACTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTCTGGAAAACTGGGAACGGGAATTAAAAAGGTGGTGTCCATCCTTCTCTGTTCTTCAATACCATGGGGCTGGACGGGCAGCATACTGCAAGGAGTTGAACTCCCTGTCCAAGGCAGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTAATGTCTGTTGCAAGAAATGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAGAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTATGCTGCCTGATATTTTTGCTACTGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGATGGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAAGCAGCAGGAAACTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCTCGGATGGAAAAATGTTCCAATCTTAATTCAAAGAGTGTTCTTGAAGTTCTTCCTCGACGACAGATAAACAACTATTTTGTTCAGTTCCGCAAGATAGCAAACCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGCTAGAAAGCTACATCCGATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAATTACAATGACTTCTGTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGGAGGGTGGTCATCGAGCCTTGATCTTTAGTCAATGGACTTCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGATTGACCTATAAACGGCTTGATGGAAGTACACAGGTGGCGGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCCGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCCGAAGATCGGTGCCATCGAATTGGTCAGACAAAGCCTGTAACCATATATCGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTACGAGATTGCAAAAAGAAAGCTAGTATTAGATGCTGCCGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAAATATTGTCTGCAATTTTATTGAGTTAA 2265 0.46 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPVESFAYTSTSKVDVSSENDDDSDCVEIAPEAANFRQNLDDLEDADVDDEPVPASRGRRFIIDEEEEEDGEEENGGRDGHVAELYDVESSEEEVVEEEVEELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVARGSEEDSGFKPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFATEDVDLKKLLNAEDGDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMEKQQETAYKEAIEEYRAVSQARMEKCSNLNSKSVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFCIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRALIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1342 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 396 IPR014001 -
Gso7g1342 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 735 IPR027417 -
Gso7g1342 754 SMART ultradead3 200 406 IPR014001 -
Gso7g1342 754 CDD SF2_C_SNF 571 704 - -
Gso7g1342 754 MobiDBLite consensus disorder prediction 1 116 - -
Gso7g1342 754 Gene3D - 179 456 IPR038718 -
Gso7g1342 754 SMART helicmild6 610 693 IPR001650 -
Gso7g1342 754 MobiDBLite consensus disorder prediction 85 99 - -
Gso7g1342 754 Pfam Helicase conserved C-terminal domain 581 693 IPR001650 -
Gso7g1342 754 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 51 752 - -
Gso7g1342 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 431 IPR027417 -
Gso7g1342 754 Gene3D - 539 751 IPR027417 -
Gso7g1342 754 MobiDBLite consensus disorder prediction 1 21 - -
Gso7g1342 754 PANTHER SNF2/RAD54 HELICASE FAMILY 51 752 - -
Gso7g1342 754 Pfam SNF2-related domain 225 511 IPR000330 GO:0005524|GO:0140658
Gso7g1342 754 Coils Coil 121 141 - -
Gso7g1342 754 CDD DEXHc_Snf 205 398 - -
Gso7g1342 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 751 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1342 Gso-Chr7 19638496 19649273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1342 226 732 RAD5 or RAD16-like Gene Family AT5G22750 28.090 2.55e-50 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso7g1342 SNF2_N 2.1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1342 K14439 - gmx:100798038 1408.28