Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1340 ATGAATTTTCTCTTTTCACGGGAAAACCTTCCCCCACCTCCGGGAATCCCAATCCCCGCCACCATTGCCGCCGCCAACACCACCCCAAACCCAATTCTAATCCCAAAGCTCGAACCTTTCGACGAATTGCTCAACACCCACACACCCCAACAACAACAACAATCTCAGGACCCCAGTTTTTCAAATGGGTCCCTTGACCTCGACCTCGACCTCGACCTCAAGCTCGTCTGCGACGAAACCCCCGGTGCTTTCTCTGGCGACCCAAGCTTGCTCTCAGATTTCAACCGTCTCTCTCAGCTTTTCAAAACCGCTTTCACCAACAACAACGCCGTTCTCGACCCCATCGCCCAAGGGCTCCAGCAGCTCCAAAACGACGCTGTTTCCGACCCTCTAGACGGCACTACCGTTGTTCCACCGCAGAGCTTCCAAAATTCGGACCCCGGGATGCAGCAGCAGCAGCAGTACCCGAACGGGGCCGTTTCGGACCCGGATTCGCGGGCAATTGTGCCGGTCCCGGAGGAAGGGCGGTCCTCTTCGGTGGCGGTCACCACGCCGCGGCAGCGGCGCTTCAAGGAGCTGGTCCGCCTGACGGATGTCGGCGGGCCGGAGCAACGGCACTTCCGGGACGTGGTCCGCCGGACGAGGATGGTTTACGACTCCCTGCGCGTCCTGGCGACGGTGGAGGACGAGGGCCGGGTGGATGCCCGCCGGGGGCGCAGCGATCTGCGCGCCTCGGCGGTGATGAGGAACTGTGGCCTGTGGCTGAACCGTGACAAGAGAATTGTTGGTGCAATTCCCGGTGTCTGCATTGGTGATGTGTTCCTTTATAGGATGGAGTTGTGTGTTGTTGGCCTTCACGGTCAGCCTCAGGCTGGGATTGATTATCTCCCTGCTAGCATGAGTTCCAATGGTGAACCAATTGCCACTAGTGTCATTGTTTCTGGTGGTTATGAGGATGATGTTGATGAGGGTGATGTTATTATTTACTCTGGCCATGGTGGCCAGGACAAGCATTCTAGGCAGGTTTTCCACCAGAAGCTTGAGGGGGGGAACCTTGCAATGGAGAGGAGTATGCACTATGGGATTGAGGTGAGGGTCATTCGCGGAGTGCGGTATGAGGGTGCTGCCTCTGCTACTGGGAGGTTGTATGTGTATGATGGGTTGTATAGAATTCATGAGTGCTGGTTTGATGTGGGGAAGTCGGGTTTTGGGGTTTATAAGTATAAGCTGTGTAGGATTGATGGGCAGGCTAAGATGGGGACTGTGGTGATGAAGGAGGCGCTTATGCTTAGGAAGGATCCCTTGAGTTTCAAACCCACGTGTTGTTTGTCGCTTGATGTTTCAAATAGGAAGGAGAATGTGGCGGTTCGGCTTTTCAATGACATTGATCCTAACTATGACCCTCTGCAGTATGAGTATCTTGTGAAGACAAATTTTCCGCAGTTTGTGTTCCATCAGAGCGGGAGGGGGACAGGTTGTGAGTGTGCGGACGGGTGTGTTGAGGGGTGCTTTTGTGCCATGAAGAATGGAGGGGATTTTCCTTATAATCAGAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCATTTTGTCGTTGTCCTCCTCATTGTCGGAACCGTGTCACGCAGAAGGGGTTGAAAAATAGGTTGGAAGTGTTCAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCATGGACCTTATTCAAGCTGGTGCTTTTATATGCGAGTACACAGGGGTTGTTCTGACTAGGGAGCAAGCACGGCTTTTGACTATGAATGGTGATTCCTTGATATATCCAAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGACTTGTCTATGATAGACTCCAATTTTGTGCGTCCATCATATCCGTCAATACCTCCTTTGGATTTTGCCATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCAACTCCCAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTGATGTTCCCTCGCCTTATGCTATTTGCGATGGAGAGCATCCCTCCGATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCTATATGCAATGAATGA 2130 0.5202 MNFLFSRENLPPPPGIPIPATIAAANTTPNPILIPKLEPFDELLNTHTPQQQQQSQDPSFSNGSLDLDLDLDLKLVCDETPGAFSGDPSLLSDFNRLSQLFKTAFTNNNAVLDPIAQGLQQLQNDAVSDPLDGTTVVPPQSFQNSDPGMQQQQQYPNGAVSDPDSRAIVPVPEEGRSSSVAVTTPRQRRFKELVRLTDVGGPEQRHFRDVVRRTRMVYDSLRVLATVEDEGRVDARRGRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGAASATGRLYVYDGLYRIHECWFDVGKSGFGVYKYKLCRIDGQAKMGTVVMKEALMLRKDPLSFKPTCCLSLDVSNRKENVAVRLFNDIDPNYDPLQYEYLVKTNFPQFVFHQSGRGTGCECADGCVEGCFCAMKNGGDFPYNQSGILLRGKPLVFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSMDLIQAGAFICEYTGVVLTREQARLLTMNGDSLIYPNRFTDRWAEWGDLSMIDSNFVRPSYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPRLMLFAMESIPPMRELSLDYGVADEWTGKLSICNE* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1340 709 Pfam SET domain 563 695 IPR001214 GO:0005515
Gso7g1340 709 Pfam SAD/SRA domain 262 416 IPR003105 -
Gso7g1340 709 MobiDBLite consensus disorder prediction 129 163 - -
Gso7g1340 709 SUPERFAMILY PUA domain-like 244 426 IPR015947 -
Gso7g1340 709 ProSiteProfiles Pre-SET domain profile. 491 549 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso7g1340 709 SMART set_7 552 701 IPR001214 GO:0005515
Gso7g1340 709 ProSiteProfiles YDG domain profile. 263 412 IPR003105 -
Gso7g1340 709 Pfam Pre-SET motif 448 544 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso7g1340 709 Gene3D - 260 420 IPR036987 -
Gso7g1340 709 SMART G9a_1 258 416 IPR003105 -
Gso7g1340 709 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 122 708 IPR025794 GO:0016571
Gso7g1340 709 SMART preset_2 444 536 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso7g1340 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 34 705 - -
Gso7g1340 709 ProSiteProfiles SET domain profile. 552 695 IPR001214 GO:0005515
Gso7g1340 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 34 705 - -
Gso7g1340 709 MobiDBLite consensus disorder prediction 129 160 - -
Gso7g1340 709 Gene3D SET domain 421 708 IPR046341 -
Gso7g1340 709 SUPERFAMILY SET domain 437 707 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1340 Gso-Chr7 19544166 19561399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1340 182 697 Su(var)3-9 homologs AT5G04940 37.356 1.17e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso7g1340 SAD_SRA 1.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1340 K11420 - gmx:100804592 1406.35