Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1328 ATGAAGACTAATAACAACGTTTCTGGAGAGAGGAAATCGCGGAAGAGACGCAGTGGTGAAAGTGATTCTGTGGAGGACACACTTGAAAAGTGGAAGGAGTACAACAGGCAGCAACAACTTGGCTCTAGAGAAAATGGGGTGGAAGTGATTCACAAAGTTCCTGCAAAAGGGTCGAGAAAAGGATGCATGAGAGGAAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGGATTTGGGGTAAATGGGTTGCCGAGATTCGAGAACCTATCAATGGCAAGCTTGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAGGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGCCCTTGTGCCCGTTTGAATTTTCCCGAGCCAATAGACTCTAATGGATCATCATCTTCTAGTGGAAGTGATAAAAAATCACCAAGTGGTTCTTCGGAGAATGGTGGTGATGTTGCAATAGCTGAGGAGTTGGAGGTGAACCATCGTCGGTGTCATGAAGACAGACCAAGATTTTCTAAGGTTGGTGTCTTTGAGAAAGCAGAAGAGATGCCGGTTCTTTCTGTAGGTTGTGTGGCTGATGACTCAATAGAGGAGTTGAAGGAAATCAGTAATGGCTTTGAACAGTGTCAAACAAGTGAAGAATGTAAGGCAACATCTTTGAATGATGTTAAGTCTGAAGTACCGAGAGAAAATGAAGGAATAGAGAAAGAATTGGAGGAGGTTTTGAAAAACTCTGGCATAGGTGGAGAGGGTAGACACTTGCAGAAGGAGCCTATGGATATACCTATGAATACAAGAAGTAACTTTTGTAGCTCTTCTGCCTCTTCGGATGCTGCTACCATTCTGATAAAGAGTGAAGAAACAAGAGGAGAATCAGTTGAAACTTTGAACTCTTATGAGTTGAGCTGCAGCAACCATTGCCTTGGATATATGCATAATAATATGCTGCCAGATACCAATCCAAGACCAAATTCTGAGACATCTATTGCAAAGAAACATACTGAGGAAGTAATTTCTGAAATCCTGGGACTAAGTCACAACAAGCGCTTGAAGATTAGCCATAGTCAATCACCAAATGAGCAATATAGAAGAAGTGAACATTTTGATGAGATGAAAACTAGGCTTAAGGGTTTGGAATGCAAGCTGAGAGCACATTCTATTCATTACAAGAATCAGGCACCAATAGTAGGGGACTCCAATCATCCTTCTATGCAGGGAATTCATCTCTTTGGTGGTGGCACAGTTGGACCAATTGAAGGCATGTCCCAAGTTGAGGCTTTGAACAACATCAACACAAACAGAAATTCACTACCTGGATTCAGTTCTGGCCATGGTAGGAAGTTGTGTGATCTTTCTCAACAGCTGCACAAACTTGGTGGTTACCTTCCTGAGCAATGGAATAGTATGCAGTTTCCAGACTTGGATGCTGGTCATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATATGAAGAACAGAAGTTACTTGATATATGCTTTCCACATGTAGGATCTTAG 1575 0.4241 MKTNNNVSGERKSRKRRSGESDSVEDTLEKWKEYNRQQQLGSRENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPCARLNFPEPIDSNGSSSSSGSDKKSPSGSSENGGDVAIAEELEVNHRRCHEDRPRFSKVGVFEKAEEMPVLSVGCVADDSIEELKEISNGFEQCQTSEECKATSLNDVKSEVPRENEGIEKELEEVLKNSGIGGEGRHLQKEPMDIPMNTRSNFCSSSASSDAATILIKSEETRGESVETLNSYELSCSNHCLGYMHNNMLPDTNPRPNSETSIAKKHTEEVISEILGLSHNKRLKISHSQSPNEQYRRSEHFDEMKTRLKGLECKLRAHSIHYKNQAPIVGDSNHPSMQGIHLFGGGTVGPIEGMSQVEALNNINTNRNSLPGFSSGHGRKLCDLSQQLHKLGGYLPEQWNSMQFPDLDAGHDYSFLNPDYDFGLYEEQKLLDICFPHVGS* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1328 524 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 405 - -
Gso7g1328 524 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 MobiDBLite consensus disorder prediction 7 37 - -
Gso7g1328 524 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Gso7g1328 524 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 405 - -
Gso7g1328 524 MobiDBLite consensus disorder prediction 141 164 - -
Gso7g1328 524 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Gso7g1328 524 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Gso7g1328 524 MobiDBLite consensus disorder prediction 1 44 - -
Gso7g1328 524 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1328 Gso-Chr7 19303521 19305815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1328 14 217 AP2-EREBP Transcription Factor Family AT2G40340 46.860 1.90e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso7g1328 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1328 - - gmx:100500303 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1667 18 48667775 48670108 Gso7g1328 7 19303521 19305815 GST