Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1323 ATGATGTCAAGTGTTGTTTGGCCCACATGCCTTGCCTGGTTTCTTCTCTTCACATCAAACCTATGGTCTCAAAATACAATAACTACCTATGCATTAGGAAATGAGACTGATCATTTTGCACTGCTCAAATTCAAAGAATCAATATCTCATGACCCTTTTGAAGTGTTAAACTCTTGGAATAGTTCAAGCAACTTTTGCAAGTGGCATGGAGTCACATGTAGTCCACGACACCAAAGAGTTAAAGAGCTAAATCTAAGAGGATATCACTTGCATGGATTTATATCACCCTACATTGGGAACCTTTCTTTATTGAGAATCCTCCTCCTTAATGACAATAGCTTCTACGGTGAAGTCCCGCAAGAATTGGATCGATTATTTCGATTACATGTACTCAATTTCGCTGATAACACATTATGGGGAGAATTTCCCATCAATTTGACAAATTGCTCTAAACTTATCCATTTAAGTTTAGAGGGAAATCGTTTCATTGGTGAAATACCAAGGAAGATTGGATCCTTTAGCAATCTTGAAGAGTTGCTTATTGGTAGGAACTATCTAACTAGACAAATTCCACCTTCCATAGGAAATCTATCTTCCCTCACTTGTCTTTCCTTGAGATCAAATAAATTGGAGGGGAACATACCAAAAGAAATAGGCTATTTGAAAAACTTGAGAATTTTGCGGGTGTCAGATAATAAACTATCTGGTTACATTCCTCTTTCCTTATACAATTTGTCATCTCTCAATGTCTTCATAATCACAAAAAACCAATTTAACGGTTCTTTTCCGGTCAACTTGTTCCTCACCTTGCCTAATCTCAATTTTTTTGCAGTTGGTGCGAATCAATTCTCCGGTTCAATTCCAACTTCCATCACTAATGCATCTGGGATTCAAACATTGGATATTGGTAATAACCTTTTGGTAGGACAAGTCCCAAGTCTAGGGAAGTTGAAAGATATTTCAATTCTACAACTAAATTTAAACAATGTGGGTAATTATTCCATCACACTCACCCAACTAATTGTTGGTCGTAATCATTTTTTTGGAAAAATTCCTATGGAATTAGGAAATCTTGTTAACTTAATTACCTTGGCTATGGAGAAAAATTTCCTAACTGGCATCATTCCAACTACTTTTGGTAAGCTTCAAAAGATGCAATTATTAAGTTTAGGGGTAAACAAATTGATTGGAGAGATACCTTCTTCCATTGGCAATCTCAGTCAATTATATTACCTAGAATTATCATCTAATATGTTTGATGGAAATATTCCTTCAACAATTGGAAGTTGCCGACGTTTACAATTTCTAAATCTTTCAAATAACAACATCACTGGAGCCATACCTTCACAAGTGTTTGGAATTTCCTCTTTATCTACTGCACTGGTATCACATAACTCATTAAGTGGCAGTCTACCAACAGAAATTGGCATGCTAAAAAATATTGAATGGTTGGATGTGTCTAAAAATTATATTTCCGGTGTGATTCCTAAAACAATTGGAGAATGCATGAAGTTGGAATACCTTTATTTAGAGGGGAACTCCTTCCATGGAAGCATGCCTCCTTCATTGGCTTCATTAAAAGGTCTTAGAAAATTAGACCTTTCAAGAAACAACTTGTCTGGATCGATTCCGGAAAGACTGCAAAATATTTCTGTTCTAGAATACTTCAATGCTTCTTTCAACATGTTGGAGGGTGAGGTACCAACAAATGGTGTCTTTCAAAATGCAAGTGCAATTTCAGTAACTGGCAATGGCAAGCTTTGCGGTGGGGTATCTGAACTAAAACTTCCACCTTGCCCTTTAAAAGTTAAGGGTAAGAAAAGAAGAAAACACCATAATTTCAAGTTAGTGGTGATGATAATCTGTTTGGTTCTTTTTCTTCCTATACTATCATGTATCCTTGGTATGTATTTGATAAGGAAAAGGAAGAAAAAGTCATCTACTAATTCAGCAATTGATCAACTTCCTAAGGTATCATACCAGAACCTAAACCATGCAACTGATGGATTCTCATCTCAGAACTTGATAGGAATAGGAAGCCATGGCTCTGTATATAAAGGAAGACTTGATTCAACAGAAGGATTTGTTGCTATAAAGGTTCTAAACCTTCAAAAGAAAGGGTCTAACAAAAGTTTTGTGGCTGAATGTAAAGCATTAAGAAATGTTCGGCATAGAAACCTAGTGAAGGCTGTCACGTGTTGCTCAAGTGTGGATTACAATGGAAATGATTTTAAAGCTTTAGTGTTTGAGTACATGTCAAATAGAAGCTTAGAGGAATGGTTGCATCCACAGAATGGAAGTGCAGAACGACCAAGAACATTGGACCTTGAGACAAGATTAGAAATTGTGGTTGGCGTTGCTTCTGCACTACATTATCTTCACCATGAGTGTGAGGAACCAATTATTCACTGTGATATAAAGCCGAGTAATGTTCTTCTTGATGATGACATGGTTGCTCATGTCAGCGATTTTGGCTTAGCAAGACTTGTCTCGAAAATCGACAACTGTCATAACCAAATTAGTACAAGTGGAATAAAAGGAACTATAGGTTATTTTCCCCCAGAGTATGGAGCCAGTTCTCAGGTGTCAACAAAGGGTGACATGTATAGCTTTGGCATCTTAATTCTAGAGATCTTAACTGGGAGACGACCAACAGAGGAAATGTTTAAAGATGGACAAACCCTTCATGACTATGTTAAAATTGCACTTCCAAATAACTTCTCGGAGATTGTTGATGCAACTCTTATTTCAATGGGAAATGAATCATCTCCTACAATAACAGTATCAGAACAAAACAACATCTTCGAGATTGTAGATCATTTGCATCCTAATACCAAGAAGTGCTTGTTTTCATTATTTAGGATTGGTCTAGCATGTTCAGTGGAGCCACCGGGACAAAGGATGAATATGATGGAAGTCACCAAGGAGCTAAATATGATTAGAAATGTTTTTTATGCTCGAAGGATCAGAGGTAATTACATAAGAGTCTTATCAATTTATACAATTATAGTTTCAGAAATCTTGTTATTGATTTCAATTGTTTTCCCATTTTGTTTTCTTACAAAATTATTTTTAAACTAG 3081 0.3616 MMSSVVWPTCLAWFLLFTSNLWSQNTITTYALGNETDHFALLKFKESISHDPFEVLNSWNSSSNFCKWHGVTCSPRHQRVKELNLRGYHLHGFISPYIGNLSLLRILLLNDNSFYGEVPQELDRLFRLHVLNFADNTLWGEFPINLTNCSKLIHLSLEGNRFIGEIPRKIGSFSNLEELLIGRNYLTRQIPPSIGNLSSLTCLSLRSNKLEGNIPKEIGYLKNLRILRVSDNKLSGYIPLSLYNLSSLNVFIITKNQFNGSFPVNLFLTLPNLNFFAVGANQFSGSIPTSITNASGIQTLDIGNNLLVGQVPSLGKLKDISILQLNLNNVGNYSITLTQLIVGRNHFFGKIPMELGNLVNLITLAMEKNFLTGIIPTTFGKLQKMQLLSLGVNKLIGEIPSSIGNLSQLYYLELSSNMFDGNIPSTIGSCRRLQFLNLSNNNITGAIPSQVFGISSLSTALVSHNSLSGSLPTEIGMLKNIEWLDVSKNYISGVIPKTIGECMKLEYLYLEGNSFHGSMPPSLASLKGLRKLDLSRNNLSGSIPERLQNISVLEYFNASFNMLEGEVPTNGVFQNASAISVTGNGKLCGGVSELKLPPCPLKVKGKKRRKHHNFKLVVMIICLVLFLPILSCILGMYLIRKRKKKSSTNSAIDQLPKVSYQNLNHATDGFSSQNLIGIGSHGSVYKGRLDSTEGFVAIKVLNLQKKGSNKSFVAECKALRNVRHRNLVKAVTCCSSVDYNGNDFKALVFEYMSNRSLEEWLHPQNGSAERPRTLDLETRLEIVVGVASALHYLHHECEEPIIHCDIKPSNVLLDDDMVAHVSDFGLARLVSKIDNCHNQISTSGIKGTIGYFPPEYGASSQVSTKGDMYSFGILILEILTGRRPTEEMFKDGQTLHDYVKIALPNNFSEIVDATLISMGNESSPTITVSEQNNIFEIVDHLHPNTKKCLFSLFRIGLACSVEPPGQRMNMMEVTKELNMIRNVFYARRIRGNYIRVLSIYTIIVSEILLLISIVFPFCFLTKLFLN* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1323 1026 PANTHER OS04G0122200 PROTEIN 328 987 - -
Gso7g1323 1026 PANTHER OS04G0122200 PROTEIN 22 332 - -
Gso7g1323 1026 SUPERFAMILY L domain-like 335 589 - -
Gso7g1323 1026 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Gso7g1323 1026 Pfam Protein kinase domain 672 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1323 1026 SUPERFAMILY Protein kinase-like (PK-like) 644 978 IPR011009 -
Gso7g1323 1026 PANTHER LRR RECEPTOR-LIKE KINASE 328 987 - -
Gso7g1323 1026 PANTHER LRR RECEPTOR-LIKE KINASE 22 332 - -
Gso7g1323 1026 Gene3D Phosphorylase Kinase; domain 1 635 751 - -
Gso7g1323 1026 SMART serkin_6 670 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1323 1026 Gene3D Transferase(Phosphotransferase) domain 1 752 990 - -
Gso7g1323 1026 ProSiteProfiles Protein kinase domain profile. 670 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g1323 1026 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Gso7g1323 1026 Gene3D Ribonuclease Inhibitor 34 324 IPR032675 -
Gso7g1323 1026 SUPERFAMILY L domain-like 34 329 - -
Gso7g1323 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Gso7g1323 1026 Gene3D Ribonuclease Inhibitor 328 600 IPR032675 -
Gso7g1323 1026 SMART LRR_typ_2 431 454 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 173 197 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 478 502 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 221 245 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 406 430 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 526 549 IPR003591 -
Gso7g1323 1026 SMART LRR_typ_2 358 381 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1323 Gso-Chr7 19256007 19259410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1323 27 985 Receptor kinase-like Gene Family AT3G47570 42.956 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso7g1323 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1323 - - gmx:100797146 1954.87