Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1303 ATGGAGTGCATCAATAACCCTACCTCTTGTGAAGGGTCATCATCATCTTCCAAGCACCCCAACAAGAGCAATAGGGAGAAAAAAGGTGTGAGGAAAAGTAACAAAGGAGGAGGAGGAGGAGTGAGGCTTTCCACTGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACTGTTTCCATGTTGGAGTGTGCCATTCACTACGTCAAGTTCCTCCAGACAGAGATTTTGCTCCACCAAGCATTGATAGACTTTGTAGATGTTGATCATCATGAGTCTCCACTGTTCCTCCCCGCAGAGTATAATAATTTCCCTGATGAACACTCCAATATTTCCCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCATCATCATCAGCAGAGTTTACCACAGCTACCACTGTCACAGTGCTACTTTCAAGGTGAAGAAGATTTTAACACCTTTGATGCCATCATGCCACCATGA 531 0.4595 MECINNPTSCEGSSSSSKHPNKSNREKKGVRKSNKGGGGGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLECAIHYVKFLQTEILLHQALIDFVDVDHHESPLFLPAEYNNFPDEHSNISLQQNPSSVSVHSHHHQQSLPQLPLSQCYFQGEEDFNTFDAIMPP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1303 176 CDD bHLH_AtIND_like 44 103 - -
Gso7g1303 176 Pfam Helix-loop-helix DNA-binding domain 53 93 IPR011598 GO:0046983
Gso7g1303 176 MobiDBLite consensus disorder prediction 1 19 - -
Gso7g1303 176 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 166 IPR045843 GO:0003700|GO:0006355
Gso7g1303 176 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 22 166 - -
Gso7g1303 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Gso7g1303 176 Gene3D - 48 100 IPR036638 GO:0046983
Gso7g1303 176 MobiDBLite consensus disorder prediction 1 55 - -
Gso7g1303 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 107 IPR036638 GO:0046983
Gso7g1303 176 SMART finulus 49 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1303 Gso-Chr7 18833321 18834163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1303 41 140 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 42.000 4.56e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g1303 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1303 - - gmx:113002129 319.701