Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1298 ATGAACTTGTCTTCATCTTCTTCCCAGTTAACTGCTAATTTTGACAAGTTAAATAGTTTTCCGCACCCACTTGAATGCTTGCAAGGGAACCCGGTTCCGGCGTTCCTGTCCAAGACTTTCGACCTCGTCAACGATCCGTCGCTGGATCTGATCATGTCCTGGGGCTCCAGCACTGTTAGCTTCGTGGTGTGGAATCCTACCCTGTTTGCAAGACACGTCTTGCCAAAGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCTAG 267 0.4682 MNLSSSSSQLTANFDKLNSFPHPLECLQGNPVPAFLSKTFDLVNDPSLDLIMSWGSSTVSFVVWNPTLFARHVLPKNFKHNNFSSFVR* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1298 88 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1298 88 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1298 88 PRINTS Heat shock factor (HSF) domain signature 86 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1298 88 Pfam HSF-type DNA-binding 35 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso7g1298 88 SUPERFAMILY "Winged helix" DNA-binding domain 33 88 IPR036390 -
Gso7g1298 88 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 22 88 - -
Gso7g1298 88 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 88 IPR027725 -
Gso7g1298 88 Gene3D - 27 88 IPR036388 -
Gso7g1298 88 SMART hsfneu3 31 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1298 Gso-Chr7 18683196 18683522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1298 20 88 HSF AT5G03720 69.565 2.02e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso7g1298 HSF_DNA-bind 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1298 K09419 - gmx:106799392 181.415