Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1277 ATGGGTTCCAAACAACGCTCTTGTGGCTCGGCCACTGCCAGAGAACGCCTACGCTGGACACAAGAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGATAGTAAGGCAACACCAAAAGGTACACTGATAGGGATGAAGGCTATGGGTGTTCCAGAATTAAAAATTTATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCTAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATATCAGATATACTGCCAAATTTTAGTTCTATAACTGTTCTTCATCCAAAGGAAGTCCTTCAAATGCAGACAGAAATGCAAAATCGCTTGAGTGATAAAAACAGAGAGCTCTTTTCTCTGCTGCGCGCATCAATGGCTGATGAAGCCACATACCCTTATACTCTGCAAGATGCACAAAATGCATTGAATCCCCTATACATCCACCCAAACGAGAGCCCATCCACCGTCCTTGTTTCACCACCGCTCTCAGACGGGAATTATCATAGTTGGTCTCGTGCGATGAAGATGAGCCTGTTGACAAAGAACAAGCTAGGATTTGTTGACAGCACGATTGTAGAACCACCTAAGAATCATGCCGTTTTACCTTTCTGGGAATGA 645 0.445 MGSKQRSCGSATARERLRWTQELHDRFVEAVNRLGGPDSKATPKGTLIGMKAMGVPELKIYHVKSHLQKYRISKLILESPTRGKLEKRSISDILPNFSSITVLHPKEVLQMQTEMQNRLSDKNRELFSLLRASMADEATYPYTLQDAQNALNPLYIHPNESPSTVLVSPPLSDGNYHSWSRAMKMSLLTKNKLGFVDSTIVEPPKNHAVLPFWE* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1277 214 SUPERFAMILY Homeodomain-like 13 72 IPR009057 -
Gso7g1277 214 Pfam gag-polypeptide of LTR copia-type 157 204 IPR029472 -
Gso7g1277 214 Gene3D - 13 75 - -
Gso7g1277 214 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 73 IPR006447 GO:0003677
Gso7g1277 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 149 IPR044848 GO:0003700
Gso7g1277 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1277 Gso-Chr7 18187391 18191836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1277 2 79 G2-like Transcription Factor Family AT5G06800 57.692 4.90e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso7g1277 Retrotran_gag_3 2.7e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1277 - - gsj:114420467 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1624 18 47862320 47866556 Gso7g1277 7 18187391 18191836 GST