Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1276 ATGGACATGGCTTCCAGTCCCCGCACCGTAGAAGAGATCTTCAAGGATTACAGCGCCAGAAGAACCTCTGTTATTCGCGCTCTCACTCACGACGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACCTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCGGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGGTTTCTGTGGCCTTTTACCTTGGGGCTCGTCTTAACCGCAATGAAAGGAAACGATTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCAACTGCGGATAGTGGAAGCAAGTCTAGGGGAAGTGCCAAGAGATCTAGCGATGGGCAAGTTAAAAGCAACCCAAAGTTTGTAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGCGGCGGAAATTACAACGCTGATGAGTTTTGGATTTGCTGTGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCATGCAGCCTGAGGCGGGGCAGGCCTTAG 720 0.4819 MDMASSPRTVEEIFKDYSARRTSVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSAKRSSDGQVKSNPKFVDEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1276 239 MobiDBLite consensus disorder prediction 148 165 - -
Gso7g1276 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Gso7g1276 239 SMART PHD_3 185 233 IPR001965 -
Gso7g1276 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Gso7g1276 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 238 - -
Gso7g1276 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Gso7g1276 239 CDD PHD_AL_plant 185 235 IPR044104 -
Gso7g1276 239 MobiDBLite consensus disorder prediction 137 175 - -
Gso7g1276 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Gso7g1276 239 Pfam PHD-finger 186 233 IPR019787 -
Gso7g1276 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Gso7g1276 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1276 Gso-Chr7 18181586 18185483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1276 4 238 Alfin-like Transcription Factor Family AT5G05610 75.847 4.79e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso7g1276 Alfin 2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1276 - - gmx:100782478 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1623 18 47855752 47860462 Gso7g1276 7 18181586 18185483 GST
Gso7g1276 7 18181586 18185483 Gso3g0466 3 8314139 8317605 PCT
Gso3g0466 3 8314139 8317605 Gso7g1276 7 18181586 18185483 PCT
Gso1g0952 1 38596968 38598000 Gso7g1276 7 18181586 18185483 PCT
Gso3g0689 3 21060815 21062045 Gso7g1276 7 18181586 18185483 PCT